+ set -o Current option settings allexport on bgnice off braceexpand on clobber on emacs off errexit off exec on glob on globstar off gmacs off histexpand off ignoreeof off interactive off keyword off letoctal off log on login_shell off markdirs off monitor off multiline off notify off pipefail off privileged off rc off restricted off showme off trackall on unset off verbose off vi off viraw on xtrace on + INITIAL_DATE=2015061000 + export INITIAL_DATE + FIRST_FILTER_DATE=2015061001 + export FIRST_FILTER_DATE + FIRST_DART_INFLATE_DATE=2015061001 + export FIRST_DART_INFLATE_DATE + FIRST_EMISS_INV_DATE=2015061001 + export FIRST_EMISS_INV_DATE + CYCLE_STR_DATE=2015061000 + export CYCLE_STR_DATE + CYCLE_END_DATE=2015061300 + export CYCLE_END_DATE + CYCLE_DATE=2015061000 + export CYCLE_DATE + NL_FAC_OBS_ERROR_MOPITT=1.00 + export NL_FAC_OBS_ERROR_MOPITT + NL_FAC_OBS_ERROR_IASI=1.00 + export NL_FAC_OBS_ERROR_IASI + RETRIEVAL_TYPE_MOPITT=RETR + export RETRIEVAL_TYPE_MOPITT + RETRIEVAL_TYPE_IASI=RAWR + export RETRIEVAL_TYPE_IASI + PERT_CHEM_GENER=true + export PERT_CHEM_GENER + USE_LOG=false + export USE_LOG + [[ false == true ]] + CO_MIN=1.e-4 + export CO_MIN + CO_MAX=NULL + export CO_MAX + O3_MIN=0. + export O3_MIN + O3_MAX=NULL + export O3_MAX + USE_LOG_CO_LOGIC=.false. + export USE_LOG_CO_LOGIC + USE_LOG_O3_LOGIC=.false. + export USE_LOG_O3_LOGIC + NL_USE_CPSR_CO_TRUNC=.false. + export NL_USE_CPSR_CO_TRUNC + NL_CPSR_CO_TRUNC_LIM=4 + export NL_CPSR_CO_TRUNC_LIM + NL_USE_CPSR_O3_TRUNC=.false. + export NL_USE_CPSR_O3_TRUNC + NL_CPSR_O3_TRUNC_LIM=4 + export NL_CPSR_O3_TRUNC_LIM + NL_AIRNOW_O3_VLOC=0 + export NL_AIRNOW_O3_VLOC + NL_TOLNET_O3_VLOC=0 + export NL_TOLNET_O3_VLOC + VARLOC=.true. + export VARLOC + INDEP_CHEM_ASIM=.false. + export INDEP_CHEM_ASIM + ADD_EMISS=.false. + export ADD_EMISS + EMISS_DAMP_CYCLE=0.5 + export EMISS_DAMP_CYCLE + EMISS_DAMP_INTRA_CYCLE=0.5 + export EMISS_DAMP_INTRA_CYCLE + BAND_ISO_VAL_CO=.09 + RUN_FINE_SCALE=false + export RUN_FINE_SCALE + RUN_FINE_SCALE_RESTART=false + export RUN_FINE_SCALE_RESTART + RESTART_DATE=2014072312 + export RESTART_DATE + [[ false == true ]] + RUN_SPECIAL_FORECAST=false + export RUN_SPECIAL_FORECAST + NUM_SPECIAL_FORECAST=1 + export NUM_SPECIAL_FORECAST + SPECIAL_FORECAST_FAC=1. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=1./2. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_FAC=2./3. + export SPECIAL_FORECAST_FAC + SPECIAL_FORECAST_MEM[1]=5 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[2]=18 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[3]=22 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[4]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[5]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[6]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[7]=1 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[8]=20 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[9]=21 + export SPECIAL_FORECAST_MEM + SPECIAL_FORECAST_MEM[10]=19 + export SPECIAL_FORECAST_MEM + PROJ_NUMBER=P93300612 + export PROJ_NUMBER + GENERAL_JOB_CLASS=normal+ + export GENERAL_JOB_CLASS + GENERAL_TIME_LIMIT=01:40:00 + export GENERAL_TIME_LIMIT + GENERAL_NODES=1 + export GENERAL_NODES + GENERAL_TASKS=1 + export GENERAL_TASKS + WRFDA_JOB_CLASS=normal+ + export WRFDA_JOB_CLASS + WRFDA_TIME_LIMIT=01:05:00 + export WRFDA_TIME_LIMIT + WRFDA_NODES=1 + export WRFDA_NODES + WRFDA_TASKS=1 + export WRFDA_TASKS + SINGLE_JOB_CLASS=normal+ + export SINGLE_JOB_CLASS + SINGLE_TIME_LIMIT=01:05:00 + export SINGLE_TIME_LIMIT + SINGLE_NODES=1 + export SINGLE_NODES + SINGLE_TASKS=1 + export SINGLE_TASKS + BIO_JOB_CLASS=normal+ + export BIO_JOB_CLASS + BIO_TIME_LIMIT=01:20:00 + export BIO_TIME_LIMIT + BIO_NODES=1 + export BIO_NODES + BIO_TASKS=1 + export BIO_TASKS + FILTER_JOB_CLASS=normal+ + export FILTER_JOB_CLASS + FILTER_TIME_LIMIT=03:30:00 + export FILTER_TIME_LIMIT + FILTER_NODES=2-4 + export FILTER_NODES + FILTER_TASKS=48 + export FILTER_TASKS + WRFCHEM_JOB_CLASS=medium+ + export WRFCHEM_JOB_CLASS + WRFCHEM_TIME_LIMIT=16:00:00 + export WRFCHEM_TIME_LIMIT + WRFCHEM_NODES=2-4 + export WRFCHEM_NODES + WRFCHEM_TASKS=48 + export WRFCHEM_TASKS + RUN_INTERPOLATE=false + export RUN_INTERPOLATE + CYCLE_PERIOD=1 + export CYCLE_PERIOD + FCST_PERIOD=1 + export FCST_PERIOD + ASIM_WINDOW=30m + export ASIM_WINDOW + MET_INTERVAL_HR=1 + export MET_INTERVAL_HR + INTERVAL_SECONDS=3600 + export INTERVAL_SECONDS + HISTORY_INTERVAL_HR=1 + export HISTORY_INTERVAL_HR + (( HISTORY_INTERVAL_MIN = 1 * 60 )) + NL_DEBUG_LEVEL=200 + export NL_DEBUG_LEVEL + WPS_VER=wrfchem3_6_1_m_debug/WPS + export WPS_VER + WPS_GEOG_VER=GEOG_DATA + export WPS_GEOG_VER + WRFDA_VER=wrfchem3_6_1_m_debug/WRFDA + export WRFDA_VER + WRF_VER=wrf3_6_1_m_debug/WRFV3 + export WRF_VER + WRFCHEM_VER=wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_VER + DART_VER=wrf-chem.r13172 + export DART_VER + SCRATCH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export SCRATCH_DIR + MODEL_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI + export MODEL_DIR + INPUT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export INPUT_DATA_DIR + SCRIPT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + export SCRIPT_DIR + EXPERIMENT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE + export EXPERIMENT_DIR + RUN_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda + export RUN_DIR + WPS_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS + export WPS_DIR + WPS_GEOG_DIR=/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7 + export WPS_GEOG_DIR + WRFCHEM_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3 + export WRFCHEM_DIR + WRFDA_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA + export WRFDA_DIR + DART_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172 + export DART_DIR + BUILD_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da + export BUILD_DIR + WRF_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3 + export WRF_DIR + HYBRID_SCRIPTS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts + export HYBRID_SCRIPTS_DIR + ADJUST_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_EMISS_INV + export ADJUST_EMISS_DIR + WES_COLDENS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS + export WES_COLDENS_DIR + MEGAN_BIO_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO + export MEGAN_BIO_DIR + FINN_FIRE_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE + export FINN_FIRE_DIR + EXPERIMENT_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA + export EXPERIMENT_DATA_DIR + MOZBC_DATA_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts + export MOZBC_DATA_DIR + EXPERIMENT_STATIC_FILES=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files + export EXPERIMENT_STATIC_FILES + EXPERIMENT_WRFCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export EXPERIMENT_WRFCHEMI_DIR + EXPERIMENT_WRFFIRECHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions + export EXPERIMENT_WRFFIRECHEMI_DIR + EXPERIMENT_WRFBIOCHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions + export EXPERIMENT_WRFBIOCHEMI_DIR + EXPERIMENT_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens + export EXPERIMENT_COLDENS_DIR + EXPERIMENT_PREPBUFR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data + export EXPERIMENT_PREPBUFR_DIR + EXPERIMENT_AIRNOW_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/airnow_csv_data + export EXPERIMENT_AIRNOW_DIR + EXPERIMENT_TOLNET_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/tolnet_text_data + export EXPERIMENT_TOLNET_DIR + EXPERIMENT_GFS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/gfs_forecasts + export EXPERIMENT_GFS_DIR + EXPERIMENT_DUST_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/dust_fields + export EXPERIMENT_DUST_DIR + EXPERIMENT_HIST_IO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files + export EXPERIMENT_HIST_IO_DIR + VTABLE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/ungrib/Variable_Tables + export VTABLE_DIR + BE_DIR=/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run + export BE_DIR + PERT_CHEM_INPUT_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT + export PERT_CHEM_INPUT_DIR + PERT_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT + export PERT_CHEM_EMISS_DIR + RUN_BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_BAND_DEPTH + export RUN_BAND_DEPTH_DIR + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/input.nml ./. + RUN_GEOGRID=false + export RUN_GEOGRID + RUN_UNGRIB=false + export RUN_UNGRIB + RUN_METGRID=false + export RUN_METGRID + GEOGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/geogrid + export GEOGRID_DIR + UNGRIB_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/ungrib + export UNGRIB_DIR + METGRID_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid + export METGRID_DIR + MAX_DOMAINS=03 + export MAX_DOMAINS + CR_DOMAIN=01 + export CR_DOMAIN + MR_DOMAIN=02 + export MR_DOMAIN + FR_DOMAIN=03 + export FR_DOMAIN + NNXP_CR=195 + export NNXP_CR + NNYP_CR=167 + export NNYP_CR + NNZP_CR=36 + export NNZP_CR + NNXP_MR=255 + export NNXP_MR + NNYP_MR=228 + export NNYP_MR + NNZP_MR=36 + export NNZP_MR + NNXP_FR=258 + export NNXP_FR + NNYP_FR=204 + export NNYP_FR + NNZP_FR=36 + export NNZP_FR + (( NNXP_STAG_CR=195+1 )) + (( NNYP_STAG_CR=167+1 )) + (( NNZP_STAG_CR=36+1 )) + (( NNXP_STAG_MR=255+1 )) + (( NNYP_STAG_MR=228+1 )) + (( NNZP_STAG_MR=36+1 )) + (( NNXP_STAG_FR=258+1 )) + (( NNYP_STAG_FR=204+1 )) + (( NNZP_STAG_FR=36+1 )) + ISTR_CR=1 + export ISTR_CR + JSTR_CR=1 + export JSTR_CR + ISTR_MR=80 + export ISTR_MR + JSTR_MR=45 + export JSTR_MR + ISTR_FR=150 + export ISTR_FR + JSTR_FR=55 + export JSTR_FR + DX_CR=27000 + export DX_CR + DX_MR=9000 + export DX_MR + DX_FR=3000 + export DX_FR + (( LBC_END=6 )) + LBC_FREQ=6 + export LBC_FREQ + LBC_START=0 + export LBC_START + START_DATE=2015061000 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061300 6 + 2> /dev/null + END_DATE=2015061306 + export END_DATE + echo 2015061000 + cut -c1-4 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061000 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061000 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061000 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061000 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-10_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061306 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061306 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061306 + END_DAY=13 + export END_DAY + cut -c9-10 + echo 2015061306 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-13_06:00:00 + export END_FILE_DATE + FG_TYPE=GFS + export FG_TYPE + GRIB_PART1=gfs.0p25. + export GRIB_PART1 + GRIB_PART2=.g2.tar + export GRIB_PART2 + SINGLE_FILE=false + export SINGLE_FILE + HOR_SCALE=1500 + export HOR_SCALE + VTABLE_TYPE=GFS + export VTABLE_TYPE + METGRID_TABLE_TYPE=ARW + export METGRID_TABLE_TYPE + NL_WRF_CORE=$'\'ARW\'' + export NL_WRF_CORE + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=00,00,00 + export NL_START_HOUR + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=13,13,13 + export NL_END_DAY + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_IO_FORM_GEOGRID=2 + export NL_IO_FORM_GEOGRID + NL_OPT_OUTPUT_FROM_GEOGRID_PATH=$'\'/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/geogrid\'' + export NL_OPT_OUTPUT_FROM_GEOGRID_PATH + NL_ACTIVE_GRID=.true.,.true.,.true. + export NL_ACTIVE_GRID + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_GEOG_DATA_RES=$'\'10s\',\'10s\',\'10s\'' + export NL_GEOG_DATA_RES + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_MAP_PROJ=$'\'lambert\'' + export NL_MAP_PROJ + NL_REF_LAT=42.83 + export NL_REF_LAT + NL_REF_LON=-92.03 + export NL_REF_LON + NL_STAND_LON=-98.0 + export NL_STAND_LON + NL_TRUELAT1=30.0 + export NL_TRUELAT1 + NL_TRUELAT2=60.0 + export NL_TRUELAT2 + NL_GEOG_DATA_PATH=$'\'/home/vy57456/zzbatmos_user/data/wrf_input/geog_3.7\'' + export NL_GEOG_DATA_PATH + NL_OPT_GEOGRID_TBL_PATH=$'\'/home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WPS/geogrid\'' + export NL_OPT_GEOGRID_TBL_PATH + NL_OUT_FORMAT=$'\'WPS\'' + export NL_OUT_FORMAT + NL_IO_FORM_METGRID=2 + export NL_IO_FORM_METGRID + [[ ! -e /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda + [[ false == true ]] + [[ false == true ]] + [[ false == true ]] + [[ 2015061000 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061000 + export DATE + cut -c1-4 + echo 2015061000 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061000 + YY=15 + export YY + cut -c5-6 + echo 2015061000 + MM=06 + export MM + cut -c7-8 + echo 2015061000 + DD=10 + export DD + cut -c9-10 + echo 2015061000 + HH=00 + export HH + DATE_SHORT=15061000 + export DATE_SHORT + FILE_DATE=2015-06-10_00:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -1 + 2> /dev/null + PAST_DATE=2015060923 + export PAST_DATE + cut -c1-4 + echo 2015060923 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015060923 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015060923 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015060923 + PAST_DD=09 + export PAST_DD + cut -c9-10 + echo 2015060923 + PAST_HH=23 + export PAST_HH + PAST_FILE_DATE=2015-06-09_23:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + NEXT_DATE=2015061001 + export NEXT_DATE + cut -c1-4 + echo 2015061001 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061001 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061001 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061001 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061001 + NEXT_HH=01 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_01:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=00 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 00 + 0 )) + [[ 00 -eq 0 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -1 + 2> /dev/null + TMP_DATE=2015060923 + export TMP_DATE + cut -c1-4 + echo 2015060923 + TMP_YYYY=2015 + export TMP_YYYY + cut -c3-4 + echo 2015060923 + TMP_YY=15 + export TMP_YY + cut -c5-6 + echo 2015060923 + TMP_MM=06 + export TMP_MM + cut -c7-8 + echo 2015060923 + TMP_DD=09 + export TMP_DD + cut -c9-10 + echo 2015060923 + TMP_HH=23 + export TMP_HH + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=09 + export D_DD + D_HH=24 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 09 + 0 )) + (( DD_HH = 24 + 0 )) + D_DATE=2015060924 + export D_DATE + echo 2015061000 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 0 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=0 + export SEC_GREG + echo 2015061001 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 3600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=3600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m + 2> /dev/null + ASIM_MIN_DATE=201506092330 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506092330 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506092330 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506092330 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506092330 + ASIM_MIN_DD=09 + export ASIM_MIN_DD + cut -c9-10 + echo 201506092330 + ASIM_MIN_HH=23 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100030 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100030 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100030 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100030 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100030 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100030 + ASIM_MAX_HH=00 + export ASIM_MAX_HH + echo 201506092330 201506092330 + echo 201506092330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151369 84600 + ASIM_MIN_DAY_GREG=151369 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=84600 + export ASIM_MIN_SEC_GREG + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=1800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=false + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=false + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=false + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=false + export RUN_PREPROCESS_OBS + [[ 2015061000 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061000 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + END_DATE=2015061001 + export END_DATE + cut -c1-4 + echo 2015061000 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061000 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061000 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061000 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061000 + START_HOUR=00 + export START_HOUR + START_FILE_DATE=2015-06-10_00:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061001 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061001 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061001 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061001 + END_HOUR=01 + export END_HOUR + END_FILE_DATE=2015-06-10_01:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015060923/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=00,00,00 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=01,01,01 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-09_23:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506092330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151369 84600 + (( temp[1]=84600+1 )) + NL_FIRST_OBS_DAYS=151369 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=84601 + export NL_FIRST_OBS_SECONDS + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=1800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061000 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=0 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=0 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=3600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m + 2> /dev/null + ASIM_DATE_MIN=201506092330 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100030 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506092330 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506092330 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506092330 + ASIM_MN_DD=09 + export ASIM_MN_DD + cut -c9-10 + echo 201506092330 + ASIM_MN_HH=23 + export ASIM_MN_HH + cut -c1-4 + echo 201506100030 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100030 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100030 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100030 + ASIM_MX_HH=00 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + E_DATE=2015061001 + export E_DATE + cut -c1-4 + echo 2015061001 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061001 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061001 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061001 + E_HH=01 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + P_DATE=2015061000 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 2 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061000 -le 2015061002 ]] + cut -c1-4 + echo 2015061000 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061000 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061000 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061000 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-10_00:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_00:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_00:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_END_DATE=2015061001 + export P_END_DATE + [[ 2015061000 -le 2015061001 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061001 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061001 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061001 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061001 + L_END_HOUR=01 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_END_HOUR=01,01,01 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32011 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_25912.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147284 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061001 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061001 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + cut -c1-4 + echo 2015061001 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061001 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061001 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061001 + L_START_HOUR=01 + export L_START_HOUR + cut -c1-4 + echo 2015061002 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061002 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061002 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061002 + L_END_HOUR=02 + export L_END_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_START_HOUR=01,01,01 + export NL_START_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_END_HOUR=02,02,02 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32236 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_17370.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147285 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061001 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061000 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + cut -c1-4 + echo 2015061000 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061000 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061000 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061000 + L_START_HOUR=00 + export L_START_HOUR + cut -c1-4 + echo 2015061001 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061001 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061001 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061001 + L_END_HOUR=01 + export L_END_HOUR + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + cut -c1-4 + echo 2015061000 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + cut -c5-6 + echo 2015061000 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + cut -c7-8 + echo 2015061000 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + cut -c9-10 + echo 2015061000 + NL_START_HOUR=00,00,00 + export NL_START_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_END_HOUR=01,01,01 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\',\'2015-06-10_00:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_END_DATE + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_END_DATE=2015061001 + export P_END_DATE + [[ 2015061000 -le 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_00:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-09_23:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32375 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1933.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147286 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32388 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2621.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147287 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32402 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30765.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147288 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32429 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4341.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147289 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32444 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4984.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147290 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32457 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31963.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147291 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32484 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12405.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147292 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32498 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12645.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147293 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32511 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14175.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147294 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32538 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27614.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147295 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32552 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15925.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147296 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32565 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26500.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147297 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32593 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13511.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147298 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32610 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22703.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147299 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32623 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26017.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147300 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32651 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24606.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147301 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32664 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14432.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147302 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32677 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31508.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147303 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32705 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18315.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147304 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32718 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25504.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147305 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32731 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6270.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147306 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32759 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21383.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147307 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=304 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17321.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147308 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=320 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6506.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147309 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=355 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19475.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147310 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=369 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147311 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=387 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19661.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147312 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=414 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3154.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147313 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=427 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7923.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147314 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_00:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_00:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-09_23:30:00', / &wrfvar22 time_window_max = '2015-06-10_00:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_00:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=441 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26894.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147315 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + sleep 45 + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e002 cp: cannot stat ‘wrfda_mr_2/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + sleep 45 + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e003 cp: cannot stat ‘wrfda_fr_3/wrfvar_output’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + sleep 45 + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e004 cp: cannot stat ‘wrfda_cr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_4/wrfvar_output ]] + sleep 45 + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e004 cp: cannot stat ‘wrfda_mr_4/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_4/wrfvar_output ]] + sleep 45 + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e004 cp: cannot stat ‘wrfda_fr_4/wrfvar_output’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + sleep 45 + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e005 cp: cannot stat ‘wrfda_cr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_5/wrfvar_output ]] + sleep 45 + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e005 cp: cannot stat ‘wrfda_mr_5/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_5/wrfvar_output ]] + sleep 45 + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e005 cp: cannot stat ‘wrfda_fr_5/wrfvar_output’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + sleep 45 + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e006 cp: cannot stat ‘wrfda_cr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_6/wrfvar_output ]] + sleep 45 + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e006 cp: cannot stat ‘wrfda_mr_6/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_6/wrfvar_output ]] + sleep 45 + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e006 cp: cannot stat ‘wrfda_fr_6/wrfvar_output’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + sleep 45 + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e007 cp: cannot stat ‘wrfda_cr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_7/wrfvar_output ]] + sleep 45 + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e007 cp: cannot stat ‘wrfda_mr_7/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_7/wrfvar_output ]] + sleep 45 + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e007 cp: cannot stat ‘wrfda_fr_7/wrfvar_output’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + sleep 45 + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e008 cp: cannot stat ‘wrfda_cr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_8/wrfvar_output ]] + sleep 45 + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e008 cp: cannot stat ‘wrfda_mr_8/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_8/wrfvar_output ]] + sleep 45 + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e008 cp: cannot stat ‘wrfda_fr_8/wrfvar_output’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + sleep 45 + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e009 cp: cannot stat ‘wrfda_cr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_9/wrfvar_output ]] + sleep 45 + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e009 cp: cannot stat ‘wrfda_mr_9/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_9/wrfvar_output ]] + sleep 45 + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e009 cp: cannot stat ‘wrfda_fr_9/wrfvar_output’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + sleep 45 + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_00:00:00.e010 cp: cannot stat ‘wrfda_cr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_mr_10/wrfvar_output ]] + sleep 45 + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_00:00:00.e010 cp: cannot stat ‘wrfda_mr_10/wrfvar_output’: No such file or directory + [[ -e wrfda_fr_10/wrfvar_output ]] + sleep 45 + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_00:00:00.e010 cp: cannot stat ‘wrfda_fr_10/wrfvar_output’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_01:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1933.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2837 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13582.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147355 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2621.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2852 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4072.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147356 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30765.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2866 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26912.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147358 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4341.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2893 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12650.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147359 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2907 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_496.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147360 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31963.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2920 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24250.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147361 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12405.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2948 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5158.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147363 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12645.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2961 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_92.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147364 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=2975 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1266.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147365 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3003 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23516.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147366 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3016 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2492.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147368 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3030 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32593.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147369 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3057 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25434.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147370 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3071 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13933.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147371 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3084 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31895.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147372 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3116 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147374 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3133 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31469.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147375 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3147 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26631.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147376 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3174 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13139.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147377 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3188 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29865.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147379 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3201 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11932.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147380 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3229 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20576.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147381 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3252 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28879.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147382 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3266 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30496.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147383 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3293 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13546.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147385 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3307 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10045.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147386 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3321 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10607.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147387 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input ob.bufr + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -f hhddmmyycc + NL_SEED_ARRAY1=0010061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061000 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + [[ 00 -ge 00 ]] + [[ 00 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3348 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31780.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147388 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3362 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6575.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147389 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf be.dat da_wrfvar.exe fg job.ksh LANDUSE.TBL namelist.input + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0010061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=3376 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32452.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147391 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061001 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_us 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=19199_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 19199_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=19199_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5249 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 19199_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 19199_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_12851.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147390 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 19199 + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d03_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001 wrfinput_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e001 wrfbdy_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e001’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002 wrfinput_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e002 wrfbdy_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e002’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003 wrfinput_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e003 wrfbdy_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e003’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004 wrfinput_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e004 wrfbdy_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e004’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005 wrfinput_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e005 wrfbdy_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e005’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006 wrfinput_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e006 wrfbdy_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e006’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007 wrfinput_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e007 wrfbdy_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e007’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008 wrfinput_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e008 wrfbdy_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e008’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009 wrfinput_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e009 wrfbdy_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e009’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010 wrfinput_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e010 wrfbdy_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e010’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean ncea: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean ncea: ERROR file wrfbdy_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 ncecat: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncecat: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 ncwa: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncwa: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 ncbo: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncbo: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd ncra: ERROR file wrfinput_d01_tmp3 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncra: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf 'wrfinput_d01_*0*' + rm -rf 'wrfbdy_d01_*0*' + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_output + [[ 2015061001 -eq 2015061000 ]] + OUTPUT_DIR_CR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr + export OUTPUT_DIR_CR + OUTPUT_DIR_MR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr + export OUTPUT_DIR_MR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 + rm -rf wrfout_d02_0001 wrfout_d02_0002 wrfout_d02_0003 wrfout_d02_0004 wrfout_d02_0005 wrfout_d02_0006 wrfout_d02_0007 wrfout_d02_0008 wrfout_d02_0009 wrfout_d02_0010 + P_DATE=2015061001 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061001_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061001_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061002_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061002_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + CYCLE_DATE=2015061002 + export CYCLE_DATE + [[ 2015061002 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061002 + export DATE + cut -c1-4 + echo 2015061002 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061002 + YY=15 + export YY + cut -c5-6 + echo 2015061002 + MM=06 + export MM + cut -c7-8 + echo 2015061002 + DD=10 + export DD + cut -c9-10 + echo 2015061002 + HH=02 + export HH + DATE_SHORT=15061002 + export DATE_SHORT + FILE_DATE=2015-06-10_02:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -1 + 2> /dev/null + PAST_DATE=2015061001 + export PAST_DATE + cut -c1-4 + echo 2015061001 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061001 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061001 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061001 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061001 + PAST_HH=01 + export PAST_HH + PAST_FILE_DATE=2015-06-10_01:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + NEXT_DATE=2015061003 + export NEXT_DATE + cut -c1-4 + echo 2015061003 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061003 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061003 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061003 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061003 + NEXT_HH=03 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_03:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=02 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 02 + 0 )) + [[ 02 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=02 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 02 + 0 )) + D_DATE=2015061002 + export D_DATE + echo 2015061002 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 7200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=7200 + export SEC_GREG + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 10800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=10800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100130 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100130 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100130 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100130 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100130 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100130 + ASIM_MIN_HH=01 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100230 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100230 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100230 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100230 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100230 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100230 + ASIM_MAX_HH=02 + export ASIM_MAX_HH + echo 201506100130 201506100130 + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=5400 + export ASIM_MIN_SEC_GREG + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=9000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=false + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=false + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=false + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=false + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=false + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=false + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=false + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=false + export RUN_PREPROCESS_OBS + [[ 2015061002 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=false + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061002 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + END_DATE=2015061003 + export END_DATE + cut -c1-4 + echo 2015061002 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061002 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061002 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061002 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061002 + START_HOUR=02 + export START_HOUR + START_FILE_DATE=2015-06-10_02:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061003 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061003 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061003 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061003 + END_HOUR=03 + export END_HOUR + END_FILE_DATE=2015-06-10_03:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=02,02,02 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + (( temp[1]=5400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=5401 + export NL_FIRST_OBS_SECONDS + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=9000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061002 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=2 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=2 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=10800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100130 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100230 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100130 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100130 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100130 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100130 + ASIM_MN_HH=01 + export ASIM_MN_HH + cut -c1-4 + echo 201506100230 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100230 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100230 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100230 + ASIM_MX_HH=02 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + E_DATE=2015061003 + export E_DATE + cut -c1-4 + echo 2015061003 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061003 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061003 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061003 + E_HH=03 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + P_DATE=2015061002 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 2 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061002 -le 2015061004 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=19199 + JOBRND=6724_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 6724_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=6724_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5347 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 6724_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 6724_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_7333.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150639 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_02:00:00 mv: cannot stat ‘wrfinput_d01’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_02:00:00 mv: cannot stat ‘wrfinput_d02’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_02:00:00 mv: cannot stat ‘wrfinput_d03’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_02:00:00 mv: cannot stat ‘wrfbdy_d01’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=19199 + JOBRND=6724_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 6724_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=6724_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=5623 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 6724_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 6724_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_6358.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150642 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_03:00:00 mv: cannot stat ‘wrfinput_d01’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_03:00:00 mv: cannot stat ‘wrfinput_d02’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_03:00:00 mv: cannot stat ‘wrfinput_d03’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_03:00:00 mv: cannot stat ‘wrfbdy_d01’: No such file or directory + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + [[ false == true ]] + [[ false == true ]] + [[ false == true ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061002 -eq 2015061002 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf wrfbiochemi_d03 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=19199 + JOBRND=6724_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 6724_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=6724_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5921 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 6724_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 6724_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_15238.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150645 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + echo WRFCHEM_BIO FAILED WRFCHEM_BIO FAILED + exit = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=31742 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4506 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27233.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147396 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=31742 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4718 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11002.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147397 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=31742 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4929 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_560.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147405 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=31742 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5145 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_194.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147414 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=31742 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5378 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6183.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147431 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=31742 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5768 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2333.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147433 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 0, 0, 0, last_bin_center = 2015, 6, 10, 0, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151369, first_obs_seconds = 84601, last_obs_days = 151370, last_obs_seconds = 1800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 3600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_END_DATE=2015061001 + export L_END_DATE + TRANDOM=31742 + [[ 2015061000 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + NEXT_L_DATE=2015061001 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_01:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5982 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1972.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147434 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -lt 2015061001 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_00:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_00:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + LE_DATE=2015061001 + export LE_DATE + [[ 2015061000 -le 2015061001 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061000 -eq 2015061000 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf wrfbiochemi_d03 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6072 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_22431.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147435 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_00:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_00:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061001 -eq 2015061000 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=8046 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_20727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147487 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_01:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_01:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 3, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=31742 + JOBRND=479_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=479_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9857 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_2435.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147505 + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_00:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_00:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_00:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_00:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_00:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_00:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_01:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_01:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_01:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_01:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_01:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + LE_DATE=2015061001 + export LE_DATE + [[ 2015061000 -le 2015061001 ]] + cut -c1-4 + echo 2015061000 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_00:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_00:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_01:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_01:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda true export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147510 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_00:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_00:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 ./. + mv wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e000 + mv wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_d01_2015-06-10_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10451 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10451 rm -f tmp.10451 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set files = ( wrfinput_d01_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10521 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10521 rm -f tmp.10521 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10521 rm -f tmp.10521 if ( wrfinput_d01_2015-06-10_00:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00.e000 echo wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00.e000 ln -s wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_00:00:00.e000 wrfinput_d01_2015-06-10_00:00:00 + mv wrfbdy_d01_2015-06-10_00:00:00.e000 wrfbdy_d01_2015-06-10_00:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10607 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.10607 rm -f tmp.10607 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e001 set files = ( wrfinput_d01_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10675 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.10675 rm -f tmp.10675 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.10675 rm -f tmp.10675 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10757 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.10757 rm -f tmp.10757 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e002 set files = ( wrfinput_d01_2015-06-10_00:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10826 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.10826 rm -f tmp.10826 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.10826 rm -f tmp.10826 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10908 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10908 rm -f tmp.10908 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_00:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_00:00:00.e003 set files = ( wrfinput_d01_2015-06-10_00:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_00:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_00:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.10980 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10980 rm -f tmp.10980 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10980 rm -f tmp.10980 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11062 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.11062 rm -f tmp.11062 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11125 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.11125 rm -f tmp.11125 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11125 rm -f tmp.11125 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11207 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.11207 rm -f tmp.11207 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11271 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.11271 rm -f tmp.11271 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11271 rm -f tmp.11271 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11352 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.11352 rm -f tmp.11352 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11416 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.11416 rm -f tmp.11416 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11416 rm -f tmp.11416 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11498 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.11498 rm -f tmp.11498 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11626 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.11626 rm -f tmp.11626 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11626 rm -f tmp.11626 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11764 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.11764 rm -f tmp.11764 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11828 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.11828 rm -f tmp.11828 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11828 rm -f tmp.11828 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11910 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.11910 rm -f tmp.11910 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.11974 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.11974 rm -f tmp.11974 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.11974 rm -f tmp.11974 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_00:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_00:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12055 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.12055 rm -f tmp.12055 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.12119 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_00:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.12119 rm -f tmp.12119 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_00:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_00:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.12119 rm -f tmp.12119 if ( wrfinput_d01_2015-06-10_00:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 echo wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e003 ln -s wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_00:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_00:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_00:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_00:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda true export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147511 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_00:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 ./. + mv wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02_2015-06-10_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12240 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.12240 rm -f tmp.12240 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_00:00:00.e000 set files = ( wrfinput_d02_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_00:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_00:00:00.e000 wrfinput_d02_2015-06-10_00:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12314 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.12314 rm -f tmp.12314 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_00:00:00.e001 set files = ( wrfinput_d02_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_00:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_00:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_00:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e002 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e002’: No such file or directory + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12386 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 set line1 = `head -1 tmp.$$` head -1 tmp.12386 rm -f tmp.12386 if ( 002 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12454 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_00:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.12454 rm -f tmp.12454 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_00:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_00:00:00.e003 set files = ( wrfinput_d02_2015-06-10_00:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_00:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_00:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_00:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_00:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_00:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12526 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.12526 rm -f tmp.12526 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12593 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.12593 rm -f tmp.12593 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12661 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.12661 rm -f tmp.12661 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e007’: No such file or directory + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12729 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.12729 rm -f tmp.12729 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e008’: No such file or directory + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12796 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.12796 rm -f tmp.12796 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e009’: No such file or directory + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12864 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.12864 rm -f tmp.12864 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_00:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e010’: No such file or directory + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.12932 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.12932 rm -f tmp.12932 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda true export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147513 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_00:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_00:00:00 ./. + mv wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03_2015-06-10_00:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13490 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_00:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.13490 rm -f tmp.13490 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_00:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_00:00:00.e000 set files = ( wrfinput_d03_2015-06-10_00:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_00:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_00:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_00:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_00:00:00.e000 wrfinput_d03_2015-06-10_00:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=00 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13564 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_00:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.13564 rm -f tmp.13564 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_00:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_00:00:00.e001 set files = ( wrfinput_d03_2015-06-10_00:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_00:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_00:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_00:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13636 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_00:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.13636 rm -f tmp.13636 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_00:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_00:00:00.e002 set files = ( wrfinput_d03_2015-06-10_00:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_00:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_00:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_00:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_00:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_00:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e003 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e003’: No such file or directory + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13708 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 set line1 = `head -1 tmp.$$` head -1 tmp.13708 rm -f tmp.13708 if ( 003 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e004 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e004’: No such file or directory + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13775 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 set line1 = `head -1 tmp.$$` head -1 tmp.13775 rm -f tmp.13775 if ( 004 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e005 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e005’: No such file or directory + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13843 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 set line1 = `head -1 tmp.$$` head -1 tmp.13843 rm -f tmp.13843 if ( 005 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e006 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e006’: No such file or directory + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13911 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 set line1 = `head -1 tmp.$$` head -1 tmp.13911 rm -f tmp.13911 if ( 006 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e007 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e007’: No such file or directory + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.13978 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 set line1 = `head -1 tmp.$$` head -1 tmp.13978 rm -f tmp.13978 if ( 007 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e008 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e008’: No such file or directory + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14046 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 set line1 = `head -1 tmp.$$` head -1 tmp.14046 rm -f tmp.14046 if ( 008 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e009 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e009’: No such file or directory + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14114 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 set line1 = `head -1 tmp.$$` head -1 tmp.14114 rm -f tmp.14114 if ( 009 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_00:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e010 ./. cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e010’: No such file or directory + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.14181 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 set line1 = `head -1 tmp.$$` head -1 tmp.14181 rm -f tmp.14181 if ( 010 == all || all == all || all == all ) then if ( ls: No match. == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls: No match. set files = ( ) end set file_cnt = 0 if ( IC == BOTH ) then foreach file ( ) if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( ) if ( IC == BC ) then if ( -e run_mozbc_done ) then echo echo -------------------------------- -------------------------------- echo run_mozbc successfully completed run_mozbc successfully completed echo -------------------------------- -------------------------------- exit 0 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01_2015-06-10_00:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfbdy_d01_2015-06-10_00:00:00 wrfbdy_d01_2015-06-10_00:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02_2015-06-10_00:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03_2015-06-10_00:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_2015-06-10_00:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01_2015-06-10_00:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e001 wrfinput_d02_2015-06-10_00:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e001 wrfinput_d03_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_2015-06-10_00:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01_2015-06-10_00:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e002 wrfinput_d02_2015-06-10_00:00:00.e002 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e002 wrfinput_d03_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_2015-06-10_00:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01_2015-06-10_00:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e003 wrfinput_d02_2015-06-10_00:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e003 wrfinput_d03_2015-06-10_00:00:00.e003 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e003 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_2015-06-10_00:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01_2015-06-10_00:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e004 wrfinput_d02_2015-06-10_00:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e004 wrfinput_d03_2015-06-10_00:00:00.e004 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_2015-06-10_00:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01_2015-06-10_00:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e005 wrfinput_d02_2015-06-10_00:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e005 wrfinput_d03_2015-06-10_00:00:00.e005 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e005 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_2015-06-10_00:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01_2015-06-10_00:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e006 wrfinput_d02_2015-06-10_00:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e006 wrfinput_d03_2015-06-10_00:00:00.e006 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e006 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_2015-06-10_00:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01_2015-06-10_00:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e007 wrfinput_d02_2015-06-10_00:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e007 wrfinput_d03_2015-06-10_00:00:00.e007 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e007 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_2015-06-10_00:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01_2015-06-10_00:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e008 wrfinput_d02_2015-06-10_00:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e008 wrfinput_d03_2015-06-10_00:00:00.e008 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e008 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_2015-06-10_00:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01_2015-06-10_00:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e009 wrfinput_d02_2015-06-10_00:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e009 wrfinput_d03_2015-06-10_00:00:00.e009 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e009 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_00:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_00:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_2015-06-10_00:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01_2015-06-10_00:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_00:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e010 wrfinput_d02_2015-06-10_00:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d02_2015-06-10_00:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + WRFINPEN=wrfinput_d03_2015-06-10_00:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e010 wrfinput_d03_2015-06-10_00:00:00.e010 ncks: ERROR file /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d03_2015-06-10_00:00:00.e010 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncks: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061000 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + LE_DATE=2015061001 + export LE_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061000 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061000 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061000 + L_HH=00 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_00:00:00 wrfchemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_00:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_00:00:00 wrffirechemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_00:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_00:00:00 wrfbiochemi_d01_2015-06-10_00:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_00:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_00:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14570 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25824.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147515 + WRFCHEMI=wrfchemi_d02_2015-06-10_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_00:00:00 wrfchemi_d02_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_00:00:00 wrffirechemi_d02_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_00:00:00 wrfbiochemi_d02_2015-06-10_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_00:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_00:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14622 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_29325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147516 + WRFCHEMI=wrfchemi_d03_2015-06-10_00:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_00:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_00:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_00:00:00 wrfchemi_d03_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_00:00:00 wrffirechemi_d03_2015-06-10_00:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_00:00:00 wrfbiochemi_d03_2015-06-10_00:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_00:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_00:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_00:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=14810 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_5506.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147517 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061000 -eq 2015061000 ]] + [[ true == true ]] + NL_SW_GENERATE=true + export NL_SW_GENERATE + WRFCHEMI=wrfchemi_d01_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15349 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_14929.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147530 + WRFCHEMI=wrfchemi_d02_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15402 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_12267.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147531 + WRFCHEMI=wrfchemi_d03_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_00:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=true, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=15588 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_18045.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147532 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_00:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_00:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + false + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + TRANDOM=31742 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e001 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e001 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e001 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e001 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e001 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e001 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e001 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e001 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e001 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e001 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e001 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e001 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e001 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e001 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e001 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e001 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e001 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16810 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28792.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147544 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e002 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e002 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e002 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e002 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e002 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e002 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e002 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e002 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e002 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e002 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e002 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e002 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e002 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e002 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e002 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e002 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e002 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e002 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e002 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e002 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=16928 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_23460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147545 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e003 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e003 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e003 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e003 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e003 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e003 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e003 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e003 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e003 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e003 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e003 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e003 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e003 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e003 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e003 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e003 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e003 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e003 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e003 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e003 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17049 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_16189.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147546 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e004 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e004 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e004 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e004 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e004 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e004 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e004 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e004 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e004 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e004 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e004 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e004 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e004 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e004 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e004 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e004 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e004 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e004 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e004 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e004 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17288 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5989.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147547 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e005 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e005 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e005 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e005 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e005 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e005 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e005 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e005 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e005 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e005 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e005 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e005 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e005 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e005 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e005 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e005 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e005 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e005 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e005 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e005 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17405 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31010.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147548 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e006 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e006 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e006 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e006 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e006 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e006 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e006 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e006 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e006 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e006 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e006 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e006 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e006 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e006 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e006 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e006 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e006 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e006 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e006 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e006 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17522 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22527.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147549 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e007 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e007 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e007 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e007 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e007 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e007 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e007 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e007 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e007 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e007 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e007 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e007 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e007 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e007 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e007 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e007 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e007 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e007 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e007 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e007 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17639 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29652.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147550 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e008 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e008 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e008 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e008 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e008 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e008 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e008 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e008 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e008 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e008 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e008 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e008 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e008 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e008 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e008 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e008 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e008 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e008 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e008 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e008 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17760 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20516.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147551 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e009 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e009 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e009 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e009 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e009 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e009 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e009 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e009 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e009 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e009 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e009 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e009 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e009 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e009 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e009 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e009 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e009 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e009 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e009 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e009 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17877 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147552 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061000 + export L_DATE + [[ 2015061000 -le 2015061001 ]] + echo 2015061000 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061000 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061000 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061000 + cut -c9-10 + L_HH=00 + export L_HH + L_FILE_DATE=2015-06-10_00:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_00:00:00.e010 wrfbiochemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_00:00:00.e010 wrfbiochemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_00:00:00.e010 wrfbiochemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_00:00:00.e010 wrffirechemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_00:00:00.e010 wrffirechemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_00:00:00.e010 wrffirechemi_d03_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_00:00:00.e010 wrfchemi_d01_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_00:00:00.e010 wrfchemi_d02_2015-06-10_00:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_00:00:00.e010 wrfchemi_d03_2015-06-10_00:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 +1 + 2> /dev/null + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e010 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e010 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e010 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e010 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e010 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e010 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e010 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e010 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e010 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061001 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_00:00:00.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e010 wrfinput_d02 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_00:00:00.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e010 wrfinput_d03 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_00:00:00.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 00,00,00, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 01,01,01, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=17995 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_19504.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147553 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/ensemble_mean_input ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d03_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e001 wrfinput_d01_0001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e001 wrfbdy_d01_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e002 wrfinput_d01_0002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e002 wrfbdy_d01_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e003 wrfinput_d01_0003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e003 wrfbdy_d01_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004 wrfinput_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e004 wrfbdy_d01_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005 wrfinput_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e005 wrfbdy_d01_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006 wrfinput_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e006 wrfbdy_d01_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007 wrfinput_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e007 wrfbdy_d01_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008 wrfinput_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e008 wrfbdy_d01_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009 wrfinput_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e009 wrfbdy_d01_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061000 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010 wrfinput_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_ic/wrfinput_d01_2015-06-10_00:00:00.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_met_bc/wrfbdy_d01_2015-06-10_00:00:00.e010 wrfbdy_d01_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/real/wrfinput_d03_2015-06-10_00:00:00 wrfinput_d03_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean ncea: ERROR file wrfinput_d01_0004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 ncecat: ERROR file wrfinput_d01_0004 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncecat: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 ncwa: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncwa: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 ncbo: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncbo: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd ncra: ERROR file wrfinput_d01_tmp3 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncra: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf wrfinput_d01_tmp1.pid25669.ncecat.tmp + rm -rf wrfinput_d01_0001 wrfinput_d01_0002 wrfinput_d01_0003 + rm -rf wrfbdy_d01_0001 wrfbdy_d01_0002 wrfbdy_d01_0003 wrfbdy_d01_0004 wrfbdy_d01_0005 wrfbdy_d01_0006 wrfbdy_d01_0007 wrfbdy_d01_0008 wrfbdy_d01_0009 wrfbdy_d01_0010 + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/ensemble_mean_output ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/ensemble_mean_output + [[ 2015061000 -eq 2015061000 ]] + OUTPUT_DIR_CR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export OUTPUT_DIR_CR + OUTPUT_DIR_MR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export OUTPUT_DIR_MR + rm -rf wrfout_d01_0001 wrfout_d01_0002 wrfout_d01_0003 wrfout_d01_0004 wrfout_d01_0005 wrfout_d01_0006 wrfout_d01_0007 wrfout_d01_0008 wrfout_d01_0009 wrfout_d01_0010 + rm -rf wrfout_d02_0001 wrfout_d02_0002 wrfout_d02_0003 wrfout_d02_0004 wrfout_d02_0005 wrfout_d02_0006 wrfout_d02_0007 wrfout_d02_0008 wrfout_d02_0009 wrfout_d02_0010 + P_DATE=2015061000 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_END_DATE=2015061001 + export P_END_DATE + [[ 2015061000 -le 2015061001 ]] + cut -c1-4 + echo 2015061000 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061000 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061000 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061000 + P_HH=00 + export P_HH + P_FILE_DATE=2015-06-10_00:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e001/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e002/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e003/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e004/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e005/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e006/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e007/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e008/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e009/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_00:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e010/wrfout_d02_2015-06-10_00:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061000_mean ncea: ERROR file wrfout_d01_0002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061000_mean ncea: ERROR file wrfout_d02_0002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061000 1 + 2> /dev/null + P_DATE=2015061001 + export P_DATE + [[ 2015061001 -le 2015061001 ]] + echo 2015061001 + cut -c1-4 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e001/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e002/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e002/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e003/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e003/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e004/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e004/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e005/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e005/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e006/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e006/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e007/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e007/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e008/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e008/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e009/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e009/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e010/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial/run_e010/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061001_mean ncea: ERROR file wrfout_d01_0002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061001_mean ncea: ERROR file wrfout_d02_0002 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061001 ]] + CYCLE_DATE=2015061001 + export CYCLE_DATE + [[ 2015061001 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061001 + export DATE + cut -c1-4 + echo 2015061001 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061001 + YY=15 + export YY + cut -c5-6 + echo 2015061001 + MM=06 + export MM + cut -c7-8 + echo 2015061001 + DD=10 + export DD + cut -c9-10 + echo 2015061001 + HH=01 + export HH + DATE_SHORT=15061001 + export DATE_SHORT + FILE_DATE=2015-06-10_01:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -1 + 2> /dev/null + PAST_DATE=2015061000 + export PAST_DATE + cut -c1-4 + echo 2015061000 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061000 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061000 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061000 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061000 + PAST_HH=00 + export PAST_HH + PAST_FILE_DATE=2015-06-10_00:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + NEXT_DATE=2015061002 + export NEXT_DATE + cut -c1-4 + echo 2015061002 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061002 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061002 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061002 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061002 + NEXT_HH=02 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_02:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=01 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 01 + 0 )) + [[ 01 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=01 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 01 + 0 )) + D_DATE=2015061001 + export D_DATE + echo 2015061001 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 3600 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=3600 + export SEC_GREG + echo 2015061002 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 7200 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=7200 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100030 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100030 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100030 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100030 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100030 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100030 + ASIM_MIN_HH=00 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100130 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100130 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100130 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100130 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100130 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100130 + ASIM_MAX_HH=01 + export ASIM_MAX_HH + echo 201506100030 201506100030 + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=1800 + export ASIM_MIN_SEC_GREG + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=5400 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=false + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=false + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=false + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=false + export RUN_PREPROCESS_OBS + [[ 2015061001 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061001 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + END_DATE=2015061002 + export END_DATE + cut -c1-4 + echo 2015061001 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061001 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061001 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061001 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061001 + START_HOUR=01 + export START_HOUR + START_FILE_DATE=2015-06-10_01:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061002 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061002 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061002 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061002 + END_HOUR=02 + export END_HOUR + END_FILE_DATE=2015-06-10_02:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=01,01,01 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=02,02,02 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100030 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 1800 + (( temp[1]=1800+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=1801 + export NL_FIRST_OBS_SECONDS + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=5400 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061001 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.false. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=1 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=1 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=7200 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100030 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100130 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100030 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100030 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100030 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100030 + ASIM_MN_HH=00 + export ASIM_MN_HH + cut -c1-4 + echo 201506100130 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100130 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100130 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100130 + ASIM_MX_HH=01 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + E_DATE=2015061002 + export E_DATE + cut -c1-4 + echo 2015061002 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061002 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061002 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061002 + E_HH=02 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + P_DATE=2015061001 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 2 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061001 -le 2015061003 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + P_DATE=2015061001 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061001 -le 2015061002 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061001 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + cut -c1-4 + echo 2015061001 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061001 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061001 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061001 + L_START_HOUR=01 + export L_START_HOUR + cut -c1-4 + echo 2015061002 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061002 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061002 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061002 + L_END_HOUR=02 + export L_END_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_START_HOUR=01,01,01 + export NL_START_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_END_HOUR=02,02,02 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26068 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_11719.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147693 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26303 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_4083.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147694 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061001 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + cut -c1-4 + echo 2015061001 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061001 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061001 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061001 + L_START_HOUR=01 + export L_START_HOUR + cut -c1-4 + echo 2015061002 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061002 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061002 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061002 + L_END_HOUR=02 + export L_END_HOUR + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + cut -c1-4 + echo 2015061001 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + cut -c5-6 + echo 2015061001 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + cut -c7-8 + echo 2015061001 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + cut -c9-10 + echo 2015061001 + NL_START_HOUR=01,01,01 + export NL_START_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_END_HOUR=02,02,02 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\',\'2015-06-10_01:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_END_DATE + P_DATE=2015061001 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061001 -le 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_01:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_00:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26444 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25681.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147695 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26457 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23539.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147696 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26471 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18045.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147697 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26498 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_622.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147698 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26512 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21785.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147699 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26525 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27587.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147700 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26552 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14362.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147701 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26566 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15711.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147702 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26579 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12579.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147703 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26606 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13156.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147704 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26620 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20672.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147705 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26633 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16549.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147706 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26660 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15475.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147707 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26674 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26337.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147708 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26688 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30697.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147709 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26716 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3457.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147710 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26729 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19127.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147711 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26742 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21586.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147712 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26770 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_404.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147713 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26783 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17140.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147714 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26796 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17901.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147715 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26824 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13047.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147716 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26837 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10093.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147717 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26850 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23816.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147718 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26878 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_779.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147719 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26891 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5745.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147720 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26905 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14182.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147721 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26932 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5373.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147722 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26945 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28493.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147723 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_01:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_01:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_00:30:00', / &wrfvar22 time_window_max = '2015-06-10_01:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_01:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26959 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1479.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147724 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_01:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_01:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_01:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_02:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25681.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + echo 2015061001 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27222 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14537.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147725 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23539.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27236 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30178.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147726 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18045.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27249 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13568.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147727 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_622.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27277 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20495.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147728 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21785.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27291 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32446.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147729 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27587.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27304 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14895.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147730 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14362.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27332 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24961.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147731 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15711.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27346 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21525.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147732 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12579.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27359 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_641.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147733 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13156.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27387 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20400.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147734 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20672.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27401 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16251.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147735 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16549.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27415 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16377.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147736 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15475.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27442 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27077.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147737 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26337.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27460 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30290.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147738 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30697.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27473 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147739 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3457.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27501 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22647.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147740 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19127.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27516 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147741 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21586.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27529 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20816.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147742 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_404.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27557 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15711.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147743 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17140.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27570 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23724.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147744 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17901.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27584 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18671.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147745 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13047.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27612 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147746 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10093.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27625 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30332.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147747 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23816.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27639 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17122.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147748 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_779.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27666 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7407.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147749 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5745.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27680 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7595.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147750 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14182.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27693 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26689.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147751 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5373.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -f hhddmmyycc + NL_SEED_ARRAY1=0110061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061001 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + [[ 01 -ge 00 ]] + [[ 01 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27721 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7732.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147752 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28493.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27734 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23370.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147753 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1479.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0110061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27748 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16942.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147754 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28046 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5024.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147756 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28258 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5053.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147757 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28470 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_19776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147758 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28682 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_7385.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147759 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28893 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28354.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147760 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29110 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_14836.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147761 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29448 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_700.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147762 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29661 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6361.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147763 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29872 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10797.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147764 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .false., .false., inf_sd_initial_from_restart = .false., .false., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 1, 0, 0, last_bin_center = 2015, 6, 10, 1, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 1801, last_obs_days = 151370, last_obs_seconds = 5400, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 7200, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_END_DATE=2015061002 + export L_END_DATE + TRANDOM=31742 + [[ 2015061001 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + NEXT_L_DATE=2015061002 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_02:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30083 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29882.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147765 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -lt 2015061002 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_01:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_01:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + LE_DATE=2015061002 + export LE_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061001 -eq 2015061001 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf wrfbiochemi_d03 + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=30172 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_15048.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147766 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_01:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_01:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061002 -eq 2015061001 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32011 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_25912.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147782 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_02:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_02:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03 + rm -rf GLOBAL_FINNv15_2014_MOZ4_7112014.txt GLOBAL_FINNv15_2015_MOZ4_11032016.txt GLOBAL_FINNv15_2016_MOZ4_11022016.txt GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 3, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=31742 + JOBRND=479_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=479_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1497 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_4166.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147867 + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_01:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_01:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_01:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_01:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_01:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_01:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_02:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_02:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_02:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_02:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_02:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + LE_DATE=2015061002 + export LE_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_01:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_01:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_02:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147874 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_01:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_01:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 ./. + mv wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e000 + mv wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_d01_2015-06-10_01:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2161 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_01:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.2161 rm -f tmp.2161 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e000 set files = ( wrfinput_d01_2015-06-10_01:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2229 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.2229 rm -f tmp.2229 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.2229 rm -f tmp.2229 if ( wrfinput_d01_2015-06-10_01:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00.e000 echo wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01_2015-06-10_01:00:00.e000 ln -s wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_01:00:00.e000 wrfinput_d01_2015-06-10_01:00:00 + mv wrfbdy_d01_2015-06-10_01:00:00.e000 wrfbdy_d01_2015-06-10_01:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2317 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_01:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.2317 rm -f tmp.2317 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e001 set files = ( wrfinput_d01_2015-06-10_01:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2394 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.2394 rm -f tmp.2394 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.2394 rm -f tmp.2394 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2482 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_01:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.2482 rm -f tmp.2482 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e002 set files = ( wrfinput_d01_2015-06-10_01:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2552 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.2552 rm -f tmp.2552 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.2552 rm -f tmp.2552 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2648 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_01:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2648 rm -f tmp.2648 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e003 set files = ( wrfinput_d01_2015-06-10_01:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2723 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2723 rm -f tmp.2723 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2723 rm -f tmp.2723 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2805 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_01:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2805 rm -f tmp.2805 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e004 set files = ( wrfinput_d01_2015-06-10_01:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2880 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2880 rm -f tmp.2880 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2880 rm -f tmp.2880 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2962 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_01:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.2962 rm -f tmp.2962 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e005 set files = ( wrfinput_d01_2015-06-10_01:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3034 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.3034 rm -f tmp.3034 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.3034 rm -f tmp.3034 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3120 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= echo TYPE=IC grep --color=auto TYPE= if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_01:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.3120 rm -f tmp.3120 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e006 set files = ( wrfinput_d01_2015-06-10_01:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3188 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.3188 rm -f tmp.3188 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.3188 rm -f tmp.3188 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3280 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_01:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.3280 rm -f tmp.3280 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e007 set files = ( wrfinput_d01_2015-06-10_01:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3348 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.3348 rm -f tmp.3348 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.3348 rm -f tmp.3348 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3430 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_01:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.3430 rm -f tmp.3430 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e008 set files = ( wrfinput_d01_2015-06-10_01:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3497 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.3497 rm -f tmp.3497 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.3497 rm -f tmp.3497 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3580 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_01:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.3580 rm -f tmp.3580 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e009 set files = ( wrfinput_d01_2015-06-10_01:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3647 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.3647 rm -f tmp.3647 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.3647 rm -f tmp.3647 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_01:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_01:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3729 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3729 rm -f tmp.3729 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_01:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_01:00:00.e010 set files = ( wrfinput_d01_2015-06-10_01:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_01:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_01:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_01:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3797 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3797 rm -f tmp.3797 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_01:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_01:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_01:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3797 rm -f tmp.3797 if ( wrfinput_d01_2015-06-10_01:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 echo wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e010 ln -s wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_01:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_01:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_01:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_01:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_01:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147875 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_01:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 ./. + mv wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02_2015-06-10_01:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3923 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_01:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.3923 rm -f tmp.3923 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e000 set files = ( wrfinput_d02_2015-06-10_01:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_01:00:00.e000 wrfinput_d02_2015-06-10_01:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3997 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_01:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.3997 rm -f tmp.3997 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e001 set files = ( wrfinput_d02_2015-06-10_01:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4069 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_01:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.4069 rm -f tmp.4069 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e002 set files = ( wrfinput_d02_2015-06-10_01:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4141 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_01:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.4141 rm -f tmp.4141 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e003 set files = ( wrfinput_d02_2015-06-10_01:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4213 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_01:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.4213 rm -f tmp.4213 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e004 set files = ( wrfinput_d02_2015-06-10_01:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4286 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_01:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.4286 rm -f tmp.4286 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e005 set files = ( wrfinput_d02_2015-06-10_01:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4358 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_01:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.4358 rm -f tmp.4358 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e006 set files = ( wrfinput_d02_2015-06-10_01:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4430 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_01:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.4430 rm -f tmp.4430 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e007 set files = ( wrfinput_d02_2015-06-10_01:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4506 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_01:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.4506 rm -f tmp.4506 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e008 set files = ( wrfinput_d02_2015-06-10_01:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4578 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_01:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.4578 rm -f tmp.4578 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e009 set files = ( wrfinput_d02_2015-06-10_01:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_01:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4650 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4650 rm -f tmp.4650 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_01:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_01:00:00.e010 set files = ( wrfinput_d02_2015-06-10_01:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_01:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_01:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_01:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_01:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147876 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_01:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 ./. + mv wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03_2015-06-10_01:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4886 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_01:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.4886 rm -f tmp.4886 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e000 set files = ( wrfinput_d03_2015-06-10_01:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_01:00:00.e000 wrfinput_d03_2015-06-10_01:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=01 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4960 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_01:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.4960 rm -f tmp.4960 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e001 set files = ( wrfinput_d03_2015-06-10_01:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5032 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_01:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.5032 rm -f tmp.5032 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e002 set files = ( wrfinput_d03_2015-06-10_01:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5104 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_01:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.5104 rm -f tmp.5104 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e003 set files = ( wrfinput_d03_2015-06-10_01:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5177 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_01:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.5177 rm -f tmp.5177 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e004 set files = ( wrfinput_d03_2015-06-10_01:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5249 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_01:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.5249 rm -f tmp.5249 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e005 set files = ( wrfinput_d03_2015-06-10_01:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5322 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_01:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.5322 rm -f tmp.5322 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e006 set files = ( wrfinput_d03_2015-06-10_01:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5394 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_01:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.5394 rm -f tmp.5394 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e007 set files = ( wrfinput_d03_2015-06-10_01:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5466 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_01:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.5466 rm -f tmp.5466 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e008 set files = ( wrfinput_d03_2015-06-10_01:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5539 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_01:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.5539 rm -f tmp.5539 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e009 set files = ( wrfinput_d03_2015-06-10_01:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_01:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5611 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_01:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5611 rm -f tmp.5611 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_01:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_01:00:00.e010 set files = ( wrfinput_d03_2015-06-10_01:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_01:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_01:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_01:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_01:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01_2015-06-10_01:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfbdy_d01_2015-06-10_01:00:00 wrfbdy_d01_2015-06-10_01:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02_2015-06-10_01:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03_2015-06-10_01:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01_2015-06-10_01:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e001 wrfbdy_d01_2015-06-10_01:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e001 wrfinput_d02_2015-06-10_01:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e001 wrfinput_d03_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01_2015-06-10_01:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e002 wrfbdy_d01_2015-06-10_01:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e002 wrfinput_d02_2015-06-10_01:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e002 wrfinput_d03_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01_2015-06-10_01:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e003 wrfbdy_d01_2015-06-10_01:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e003 wrfinput_d02_2015-06-10_01:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e003 wrfinput_d03_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01_2015-06-10_01:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e004 wrfbdy_d01_2015-06-10_01:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e004 wrfinput_d02_2015-06-10_01:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e004 wrfinput_d03_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01_2015-06-10_01:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e005 wrfbdy_d01_2015-06-10_01:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e005 wrfinput_d02_2015-06-10_01:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e005 wrfinput_d03_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01_2015-06-10_01:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e006 wrfbdy_d01_2015-06-10_01:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e006 wrfinput_d02_2015-06-10_01:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e006 wrfinput_d03_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01_2015-06-10_01:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e007 wrfbdy_d01_2015-06-10_01:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e007 wrfinput_d02_2015-06-10_01:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e007 wrfinput_d03_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01_2015-06-10_01:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e008 wrfbdy_d01_2015-06-10_01:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e008 wrfinput_d02_2015-06-10_01:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e008 wrfinput_d03_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01_2015-06-10_01:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e009 wrfbdy_d01_2015-06-10_01:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e009 wrfinput_d02_2015-06-10_01:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e009 wrfinput_d03_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_01:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_01:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01_2015-06-10_01:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_bc/wrfbdy_d01_2015-06-10_01:00:00.e010 wrfbdy_d01_2015-06-10_01:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_01:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d02_2015-06-10_01:00:00.e010 wrfinput_d02_2015-06-10_01:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_01:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_met_ic/wrfinput_d03_2015-06-10_01:00:00.e010 wrfinput_d03_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061001 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + LE_DATE=2015061002 + export LE_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061001 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061001 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061001 + L_HH=01 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061001 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_01:00:00 wrfchemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_01:00:00 wrffirechemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_01:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_01:00:00 wrfbiochemi_d01_2015-06-10_01:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6230 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_24773.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147887 + WRFCHEMI=wrfchemi_d02_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_01:00:00 wrfchemi_d02_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_01:00:00 wrffirechemi_d02_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_01:00:00 wrfbiochemi_d02_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6282 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27950.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147888 + WRFCHEMI=wrfchemi_d03_2015-06-10_01:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_01:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_01:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_01:00:00 wrfchemi_d03_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_01:00:00 wrffirechemi_d03_2015-06-10_01:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_01:00:00 wrfbiochemi_d03_2015-06-10_01:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_01:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_01:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_01:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6347 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_24639.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147889 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061001 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6578 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_23168.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147890 + WRFCHEMI=wrfchemi_d02_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6629 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_1366.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147891 + WRFCHEMI=wrfchemi_d03_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_01:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6822 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_10741.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1147892 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_01:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_01:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + false + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + TRANDOM=31742 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e001 ]] + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e001 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e001 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e001 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e001 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e001 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e001 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e001 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e001 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e001 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e001 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e001 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e001 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e001 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e001 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e001 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e001 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e001 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8045 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_20481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147988 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e002 ]] + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e002 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e002 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e002 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e002 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e002 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e002 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e002 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e002 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e002 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e002 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e002 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e002 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e002 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e002 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e002 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e002 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e002 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e002 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8163 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_9909.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147989 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e003 ]] + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e003 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e003 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e003 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e003 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e003 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e003 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e003 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e003 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e003 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e003 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e003 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e003 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e003 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e003 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e003 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e003 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e003 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e003 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8339 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_18362.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147990 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e004 ]] + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e004 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e004 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e004 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e004 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e004 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e004 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e004 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e004 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e004 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e004 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e004 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e004 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e004 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e004 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e004 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e004 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e004 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e004 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8535 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25778.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147994 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e005 ]] + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e005 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e005 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e005 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e005 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e005 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e005 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e005 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e005 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e005 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e005 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e005 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e005 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e005 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e005 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e005 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e005 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e005 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e005 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8653 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28264.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147996 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e006 ]] + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e006 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e006 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e006 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e006 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e006 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e006 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e006 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e006 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e006 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e006 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e006 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e006 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e006 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e006 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e006 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e006 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e006 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e006 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8777 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_1250.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1147998 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e007 ]] + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e007 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e007 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e007 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e007 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e007 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e007 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e007 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e007 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e007 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e007 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e007 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e007 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e007 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e007 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e007 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e007 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e007 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e007 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8897 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_12646.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148000 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e008 ]] + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e008 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e008 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e008 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e008 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e008 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e008 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e008 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e008 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e008 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e008 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e008 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e008 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e008 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e008 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e008 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e008 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e008 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e008 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9015 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_10843.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148003 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e009 ]] + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e009 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e009 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e009 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e009 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e009 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e009 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e009 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e009 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e009 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e009 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e009 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e009 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e009 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e009 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e009 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e009 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e009 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e009 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9134 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25237.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148005 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_initial + false + [[ ! -e run_e010 ]] + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061001 + export L_DATE + [[ 2015061001 -le 2015061002 ]] + echo 2015061001 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061001 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061001 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061001 + cut -c9-10 + L_HH=01 + export L_HH + L_FILE_DATE=2015-06-10_01:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_01:00:00.e010 wrfbiochemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_01:00:00.e010 wrfbiochemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_01:00:00.e010 wrfbiochemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_01:00:00.e010 wrffirechemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_01:00:00.e010 wrffirechemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_01:00:00.e010 wrffirechemi_d03_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_01:00:00.e010 wrfchemi_d01_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_01:00:00.e010 wrfchemi_d02_2015-06-10_01:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_01:00:00.e010 wrfchemi_d03_2015-06-10_01:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 +1 + 2> /dev/null + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061002 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e010 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e010 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e010 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e010 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e010 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e010 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e010 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061002 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_01:00:00.e010 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_01:00:00.e010 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 01,01,01, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 02,02,02, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=9256 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_17861.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148007 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e001 wrfbdy_d01_2015-06-10_01:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e002 wrfbdy_d01_2015-06-10_01:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e003 wrfbdy_d01_2015-06-10_01:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e004 wrfbdy_d01_2015-06-10_01:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e005 wrfbdy_d01_2015-06-10_01:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e006 wrfbdy_d01_2015-06-10_01:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e007 wrfbdy_d01_2015-06-10_01:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e008 wrfbdy_d01_2015-06-10_01:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e009 wrfbdy_d01_2015-06-10_01:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_01:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_01:00:00.e010 wrfbdy_d01_2015-06-10_01:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_01:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d03_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001 wrfinput_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e001 wrfbdy_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e001’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002 wrfinput_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e002 wrfbdy_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e002’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003 wrfinput_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e003 wrfbdy_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e003’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004 wrfinput_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e004 wrfbdy_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e004’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005 wrfinput_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e005 wrfbdy_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e005’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006 wrfinput_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e006 wrfbdy_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e006’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007 wrfinput_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e007 wrfbdy_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e007’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008 wrfinput_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e008 wrfbdy_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e008’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009 wrfinput_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e009 wrfbdy_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e009’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061001 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010 wrfinput_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/dart_filter/wrfout_d01_2015-06-10_01:00:00_filt.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e010 wrfbdy_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/update_bc/wrfbdy_d01_2015-06-10_01:00:00_filt.e010’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/real/wrfinput_d03_2015-06-10_01:00:00 wrfinput_d03_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean ncea: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean ncea: ERROR file wrfbdy_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 ncecat: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncecat: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 ncwa: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncwa: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 ncbo: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncbo: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd ncra: ERROR file wrfinput_d01_tmp3 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncra: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf 'wrfinput_d01_*0*' + rm -rf 'wrfbdy_d01_*0*' + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/ensemble_mean_output + [[ 2015061001 -eq 2015061000 ]] + OUTPUT_DIR_CR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr + export OUTPUT_DIR_CR + OUTPUT_DIR_MR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr + export OUTPUT_DIR_MR + rm -rf 'wrfout_d01_*' + rm -rf 'wrfout_d02_*' + P_DATE=2015061001 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_END_DATE=2015061002 + export P_END_DATE + [[ 2015061001 -le 2015061002 ]] + cut -c1-4 + echo 2015061001 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061001 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061001 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061001 + P_HH=01 + export P_HH + P_FILE_DATE=2015-06-10_01:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_01:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_01:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061001_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061001_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061001 1 + 2> /dev/null + P_DATE=2015061002 + export P_DATE + [[ 2015061002 -le 2015061002 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061002_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061002_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061002 ]] + CYCLE_DATE=2015061002 + export CYCLE_DATE + [[ 2015061002 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061002 + export DATE + cut -c1-4 + echo 2015061002 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061002 + YY=15 + export YY + cut -c5-6 + echo 2015061002 + MM=06 + export MM + cut -c7-8 + echo 2015061002 + DD=10 + export DD + cut -c9-10 + echo 2015061002 + HH=02 + export HH + DATE_SHORT=15061002 + export DATE_SHORT + FILE_DATE=2015-06-10_02:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -1 + 2> /dev/null + PAST_DATE=2015061001 + export PAST_DATE + cut -c1-4 + echo 2015061001 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061001 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061001 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061001 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061001 + PAST_HH=01 + export PAST_HH + PAST_FILE_DATE=2015-06-10_01:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + NEXT_DATE=2015061003 + export NEXT_DATE + cut -c1-4 + echo 2015061003 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061003 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061003 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061003 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061003 + NEXT_HH=03 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_03:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=02 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 02 + 0 )) + [[ 02 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=02 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 02 + 0 )) + D_DATE=2015061002 + export D_DATE + echo 2015061002 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 7200 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=7200 + export SEC_GREG + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 10800 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=10800 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100130 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100130 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100130 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100130 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100130 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100130 + ASIM_MIN_HH=01 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100230 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100230 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100230 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100230 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100230 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100230 + ASIM_MAX_HH=02 + export ASIM_MAX_HH + echo 201506100130 201506100130 + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=5400 + export ASIM_MIN_SEC_GREG + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=9000 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=false + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=false + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=false + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=false + export RUN_PREPROCESS_OBS + [[ 2015061002 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061002 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + END_DATE=2015061003 + export END_DATE + cut -c1-4 + echo 2015061002 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061002 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061002 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061002 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061002 + START_HOUR=02 + export START_HOUR + START_FILE_DATE=2015-06-10_02:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061003 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061003 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061003 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061003 + END_HOUR=03 + export END_HOUR + END_FILE_DATE=2015-06-10_03:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061001/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=02,02,02 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100130 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 5400 + (( temp[1]=5400+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=5401 + export NL_FIRST_OBS_SECONDS + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=9000 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061002 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=2 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=2 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=10800 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100130 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100230 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100130 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100130 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100130 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100130 + ASIM_MN_HH=01 + export ASIM_MN_HH + cut -c1-4 + echo 201506100230 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100230 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100230 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100230 + ASIM_MX_HH=02 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + E_DATE=2015061003 + export E_DATE + cut -c1-4 + echo 2015061003 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061003 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061003 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061003 + E_HH=03 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + P_DATE=2015061002 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 2 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061002 -le 2015061004 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=24883 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_14583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148284 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25564 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_16793.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148285 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061002 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + cut -c1-4 + echo 2015061002 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061002 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061002 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061002 + L_START_HOUR=02 + export L_START_HOUR + cut -c1-4 + echo 2015061003 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061003 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061003 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061003 + L_END_HOUR=03 + export L_END_HOUR + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + cut -c1-4 + echo 2015061002 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + cut -c5-6 + echo 2015061002 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + cut -c7-8 + echo 2015061002 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + cut -c9-10 + echo 2015061002 + NL_START_HOUR=02,02,02 + export NL_START_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_END_HOUR=03,03,03 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\',\'2015-06-10_02:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_END_DATE + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_02:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_01:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25830 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15483.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148316 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25844 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20879.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148317 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25859 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148318 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25887 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12836.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148319 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25901 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22404.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148320 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25914 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22890.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148321 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25942 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24893.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148322 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25955 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27263.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148323 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25968 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19906.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148324 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=25996 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20056.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148325 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26009 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1861.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148326 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26022 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15529.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148327 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26050 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9107.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148328 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26063 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7172.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148329 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26077 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16812.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148330 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26104 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26911.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148331 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26117 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23098.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148332 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26131 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19148.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148333 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26158 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18560.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148334 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26172 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24446.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148335 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26185 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27592.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148336 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26212 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9957.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148337 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26226 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14346.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148338 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26239 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15260.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148339 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26266 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26214.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148340 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26280 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30825.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148341 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26293 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1169.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148342 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26321 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6254.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148343 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26334 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30604.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148344 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_02:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_02:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_01:30:00', / &wrfvar22 time_window_max = '2015-06-10_02:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_02:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26347 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22187.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148345 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_02:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_02:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_02:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15483.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26652 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11614.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148353 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20879.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26666 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25495.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148354 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13302.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26679 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15010.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148355 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12836.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26707 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28695.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148356 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22404.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26721 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30159.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148357 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22890.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26734 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25429.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148359 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24893.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26762 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148360 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27263.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26775 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12481.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148361 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19906.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26789 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2812.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148362 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20056.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26817 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23444.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148363 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1861.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26830 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31539.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148364 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15529.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26844 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32562.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148365 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9107.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26871 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16183.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148366 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_7172.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26885 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20348.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148368 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16812.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26898 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16712.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148369 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26911.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26930 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11075.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148370 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23098.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26944 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8249.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148371 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19148.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26957 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12141.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148372 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18560.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26985 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11799.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148373 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24446.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=26999 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7791.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148374 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27592.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27012 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26329.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148375 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9957.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27040 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11003.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148377 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14346.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27053 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15752.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148378 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_15260.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27067 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9812.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148379 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26214.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27095 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8785.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148380 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30825.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27108 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18845.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148381 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1169.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27122 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3711.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148382 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6254.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -f hhddmmyycc + NL_SEED_ARRAY1=0210061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061002 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + [[ 02 -ge 00 ]] + [[ 02 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27150 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4233.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148383 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30604.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27163 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5931.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148384 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22187.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0210061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=27177 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4133.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148385 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27481 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_1784.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148387 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27691 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6064.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148388 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=27902 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8065.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148389 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28116 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3701.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148391 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28335 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25085.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148393 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28667 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27626.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148394 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=28879 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11295.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148396 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29090 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26625.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148397 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29302 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15777.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148398 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 2, 0, 0, last_bin_center = 2015, 6, 10, 2, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 5401, last_obs_days = 151370, last_obs_seconds = 9000, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 10800, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_END_DATE=2015061003 + export L_END_DATE + TRANDOM=31742 + [[ 2015061002 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + NEXT_L_DATE=2015061003 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_03:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29517 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_28977.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148399 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -lt 2015061003 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_02:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_02:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061002 -eq 2015061002 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf wrfbiochemi_d03 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=29603 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_10265.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148411 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_02:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_02:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061003 -eq 2015061002 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31397 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_11308.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148470 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_03:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_03:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 3, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=31742 + JOBRND=479_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=479_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=931 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_6585.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148661 + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_02:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_02:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_02:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_02:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_02:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_02:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_03:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_03:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_03:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_03:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_03:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_02:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_02:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148666 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_02:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_02:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 ./. + mv wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e000 + mv wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_d01_2015-06-10_02:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1524 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.1524 rm -f tmp.1524 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 set files = ( wrfinput_d01_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1595 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.1595 rm -f tmp.1595 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.1595 rm -f tmp.1595 if ( wrfinput_d01_2015-06-10_02:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00.e000 echo wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00.e000 ln -s wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_02:00:00.e000 wrfinput_d01_2015-06-10_02:00:00 + mv wrfbdy_d01_2015-06-10_02:00:00.e000 wrfbdy_d01_2015-06-10_02:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1691 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.1691 rm -f tmp.1691 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e001 set files = ( wrfinput_d01_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1759 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.1759 rm -f tmp.1759 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.1759 rm -f tmp.1759 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1881 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.1881 rm -f tmp.1881 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e002 set files = ( wrfinput_d01_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.1956 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.1956 rm -f tmp.1956 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.1956 rm -f tmp.1956 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2049 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2049 rm -f tmp.2049 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e003 set files = ( wrfinput_d01_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2117 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2117 rm -f tmp.2117 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.2117 rm -f tmp.2117 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2199 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2199 rm -f tmp.2199 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e004 set files = ( wrfinput_d01_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2267 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2267 rm -f tmp.2267 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.2267 rm -f tmp.2267 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2360 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.2360 rm -f tmp.2360 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e005 set files = ( wrfinput_d01_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2432 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.2432 rm -f tmp.2432 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.2432 rm -f tmp.2432 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2518 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.2518 rm -f tmp.2518 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e006 set files = ( wrfinput_d01_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2588 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.2588 rm -f tmp.2588 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.2588 rm -f tmp.2588 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2683 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.2683 rm -f tmp.2683 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e007 set files = ( wrfinput_d01_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2758 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.2758 rm -f tmp.2758 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.2758 rm -f tmp.2758 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2847 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.2847 rm -f tmp.2847 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e008 set files = ( wrfinput_d01_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2915 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.2915 rm -f tmp.2915 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.2915 rm -f tmp.2915 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.2997 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.2997 rm -f tmp.2997 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e009 set files = ( wrfinput_d01_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3065 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.3065 rm -f tmp.3065 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.3065 rm -f tmp.3065 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_02:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_02:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3150 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3150 rm -f tmp.3150 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_02:00:00.e010 set files = ( wrfinput_d01_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_02:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.3218 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3218 rm -f tmp.3218 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_02:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.3218 rm -f tmp.3218 if ( wrfinput_d01_2015-06-10_02:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 echo wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e010 ln -s wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_02:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_02:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_02:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148695 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_02:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 ./. + mv wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02_2015-06-10_02:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3474 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.3474 rm -f tmp.3474 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e000 set files = ( wrfinput_d02_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_02:00:00.e000 wrfinput_d02_2015-06-10_02:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3548 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.3548 rm -f tmp.3548 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e001 set files = ( wrfinput_d02_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3620 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.3620 rm -f tmp.3620 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e002 set files = ( wrfinput_d02_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3693 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.3693 rm -f tmp.3693 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e003 set files = ( wrfinput_d02_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3766 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.3766 rm -f tmp.3766 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e004 set files = ( wrfinput_d02_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3843 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.3843 rm -f tmp.3843 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e005 set files = ( wrfinput_d02_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3915 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.3915 rm -f tmp.3915 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e006 set files = ( wrfinput_d02_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.3987 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.3987 rm -f tmp.3987 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e007 set files = ( wrfinput_d02_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4060 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.4060 rm -f tmp.4060 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e008 set files = ( wrfinput_d02_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4132 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.4132 rm -f tmp.4132 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e009 set files = ( wrfinput_d02_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_02:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.4204 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.4204 rm -f tmp.4204 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_02:00:00.e010 set files = ( wrfinput_d02_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_02:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_02:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_02:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148726 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_02:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 ./. + mv wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03_2015-06-10_02:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4320 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_02:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.4320 rm -f tmp.4320 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e000 set files = ( wrfinput_d03_2015-06-10_02:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_02:00:00.e000 wrfinput_d03_2015-06-10_02:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=02 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4395 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_02:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.4395 rm -f tmp.4395 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e001 set files = ( wrfinput_d03_2015-06-10_02:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4467 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_02:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.4467 rm -f tmp.4467 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e002 set files = ( wrfinput_d03_2015-06-10_02:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4539 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_02:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.4539 rm -f tmp.4539 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e003 set files = ( wrfinput_d03_2015-06-10_02:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4612 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_02:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.4612 rm -f tmp.4612 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e004 set files = ( wrfinput_d03_2015-06-10_02:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4685 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_02:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.4685 rm -f tmp.4685 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e005 set files = ( wrfinput_d03_2015-06-10_02:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4757 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_02:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.4757 rm -f tmp.4757 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e006 set files = ( wrfinput_d03_2015-06-10_02:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4829 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_02:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.4829 rm -f tmp.4829 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e007 set files = ( wrfinput_d03_2015-06-10_02:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4901 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_02:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.4901 rm -f tmp.4901 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e008 set files = ( wrfinput_d03_2015-06-10_02:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.4974 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_02:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.4974 rm -f tmp.4974 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e009 set files = ( wrfinput_d03_2015-06-10_02:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_02:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.5047 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_02:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.5047 rm -f tmp.5047 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_02:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_02:00:00.e010 set files = ( wrfinput_d03_2015-06-10_02:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_02:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_02:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_02:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_02:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01_2015-06-10_02:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfbdy_d01_2015-06-10_02:00:00 wrfbdy_d01_2015-06-10_02:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02_2015-06-10_02:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03_2015-06-10_02:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01_2015-06-10_02:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01_2015-06-10_02:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e001 wrfinput_d02_2015-06-10_02:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e001 wrfinput_d03_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01_2015-06-10_02:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01_2015-06-10_02:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e002 wrfinput_d02_2015-06-10_02:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e002 wrfinput_d03_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01_2015-06-10_02:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01_2015-06-10_02:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e003 wrfinput_d02_2015-06-10_02:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e003 wrfinput_d03_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01_2015-06-10_02:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01_2015-06-10_02:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e004 wrfinput_d02_2015-06-10_02:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e004 wrfinput_d03_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01_2015-06-10_02:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01_2015-06-10_02:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e005 wrfinput_d02_2015-06-10_02:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e005 wrfinput_d03_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01_2015-06-10_02:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01_2015-06-10_02:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e006 wrfinput_d02_2015-06-10_02:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e006 wrfinput_d03_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01_2015-06-10_02:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01_2015-06-10_02:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e007 wrfinput_d02_2015-06-10_02:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e007 wrfinput_d03_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01_2015-06-10_02:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01_2015-06-10_02:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e008 wrfinput_d02_2015-06-10_02:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e008 wrfinput_d03_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01_2015-06-10_02:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01_2015-06-10_02:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e009 wrfinput_d02_2015-06-10_02:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e009 wrfinput_d03_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_02:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_02:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01_2015-06-10_02:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_bc/wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01_2015-06-10_02:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_02:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d02_2015-06-10_02:00:00.e010 wrfinput_d02_2015-06-10_02:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_02:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_met_ic/wrfinput_d03_2015-06-10_02:00:00.e010 wrfinput_d03_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061002 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + LE_DATE=2015061003 + export LE_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061002 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061002 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061002 + L_HH=02 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_02:00:00 wrfchemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_02:00:00 wrffirechemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_02:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_02:00:00 wrfbiochemi_d01_2015-06-10_02:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5662 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_23755.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148739 + WRFCHEMI=wrfchemi_d02_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_02:00:00 wrfchemi_d02_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_02:00:00 wrffirechemi_d02_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_02:00:00 wrfbiochemi_d02_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5713 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_26347.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148740 + WRFCHEMI=wrfchemi_d03_2015-06-10_02:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_02:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_02:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_02:00:00 wrfchemi_d03_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_02:00:00 wrffirechemi_d03_2015-06-10_02:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_02:00:00 wrfbiochemi_d03_2015-06-10_02:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_02:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_02:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_02:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5778 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_9378.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061002 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6128 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_4966.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148743 + WRFCHEMI=wrfchemi_d02_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6181 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_20688.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148745 + WRFCHEMI=wrfchemi_d03_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_02:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6245 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_7637.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1148746 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_02:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_02:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + false + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + TRANDOM=31742 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e001 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e001 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e001 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e001 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e001 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e001 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e001 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e001 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e001 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e001 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e001 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e001 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e001 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e001 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e001 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e001 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e001 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7587 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_10948.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148766 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e002 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e002 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e002 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e002 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e002 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e002 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e002 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e002 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e002 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e002 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e002 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e002 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e002 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e002 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e002 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e002 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e002 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e002 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7715 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_6423.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148767 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e003 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e003 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e003 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e003 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e003 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e003 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e003 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e003 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e003 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e003 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e003 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e003 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e003 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e003 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e003 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e003 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e003 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e003 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7834 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_16222.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148768 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e004 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e004 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e004 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e004 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e004 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e004 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e004 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e004 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e004 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e004 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e004 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e004 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e004 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e004 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e004 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e004 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e004 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e004 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=7952 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_21864.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148769 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e005 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e005 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e005 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e005 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e005 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e005 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e005 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e005 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e005 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e005 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e005 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e005 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e005 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e005 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e005 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e005 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e005 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e005 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8070 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_28734.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148770 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e006 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e006 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e006 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e006 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e006 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e006 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e006 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e006 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e006 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e006 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e006 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e006 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e006 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e006 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e006 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e006 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e006 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e006 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8193 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5714.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148771 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e007 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e007 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e007 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e007 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e007 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e007 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e007 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e007 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e007 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e007 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e007 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e007 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e007 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e007 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e007 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e007 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e007 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e007 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8313 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_7345.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148772 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e008 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e008 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e008 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e008 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e008 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e008 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e008 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e008 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e008 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e008 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e008 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e008 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e008 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e008 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e008 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e008 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e008 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e008 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8432 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22806.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148773 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e009 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e009 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e009 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e009 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e009 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e009 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e009 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e009 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e009 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e009 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e009 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e009 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e009 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e009 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e009 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e009 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e009 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e009 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8550 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_27477.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148774 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_initial + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061002 + export L_DATE + [[ 2015061002 -le 2015061003 ]] + echo 2015061002 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061002 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061002 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061002 + cut -c9-10 + L_HH=02 + export L_HH + L_FILE_DATE=2015-06-10_02:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_02:00:00.e010 wrfbiochemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_02:00:00.e010 wrfbiochemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_02:00:00.e010 wrfbiochemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_02:00:00.e010 wrffirechemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_02:00:00.e010 wrffirechemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_02:00:00.e010 wrffirechemi_d03_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_02:00:00.e010 wrfchemi_d01_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_02:00:00.e010 wrfchemi_d02_2015-06-10_02:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_02:00:00.e010 wrfchemi_d03_2015-06-10_02:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 +1 + 2> /dev/null + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061003 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e010 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e010 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e010 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e010 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e010 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e010 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e010 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061003 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_02:00:00.e010 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_02:00:00.e010 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 02,02,02, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 03,03,03, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=8673 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_9093.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1148775 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e001 wrfbdy_d01_2015-06-10_02:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e002 wrfbdy_d01_2015-06-10_02:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e003 wrfbdy_d01_2015-06-10_02:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e004 wrfbdy_d01_2015-06-10_02:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e005 wrfbdy_d01_2015-06-10_02:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e006 wrfbdy_d01_2015-06-10_02:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e007 wrfbdy_d01_2015-06-10_02:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e008 wrfbdy_d01_2015-06-10_02:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e009 wrfbdy_d01_2015-06-10_02:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_02:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_02:00:00.e010 wrfbdy_d01_2015-06-10_02:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_02:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d03_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e001 wrfinput_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e001 wrfbdy_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e001’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e002 wrfinput_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e002 wrfbdy_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e002’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e003 wrfinput_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e003 wrfbdy_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e003’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e004 wrfinput_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e004 wrfbdy_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e004’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e005 wrfinput_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e005 wrfbdy_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e005’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e006 wrfinput_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e006 wrfbdy_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e006’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e007 wrfinput_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e007 wrfbdy_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e007’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e008 wrfinput_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e008 wrfbdy_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e008’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e009 wrfinput_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e009 wrfbdy_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e009’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061002 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e010 wrfinput_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/dart_filter/wrfout_d01_2015-06-10_02:00:00_filt.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e010 wrfbdy_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/update_bc/wrfbdy_d01_2015-06-10_02:00:00_filt.e010’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/real/wrfinput_d03_2015-06-10_02:00:00 wrfinput_d03_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean ncea: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean ncea: ERROR file wrfbdy_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 ncecat: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncecat: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 ncwa: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncwa: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 ncbo: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncbo: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd ncra: ERROR file wrfinput_d01_tmp3 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncra: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf 'wrfinput_d01_*0*' + rm -rf 'wrfbdy_d01_*0*' + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/ensemble_mean_output + [[ 2015061002 -eq 2015061000 ]] + OUTPUT_DIR_CR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr + export OUTPUT_DIR_CR + OUTPUT_DIR_MR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr + export OUTPUT_DIR_MR + rm -rf 'wrfout_d01_*' + rm -rf 'wrfout_d02_*' + P_DATE=2015061002 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_END_DATE=2015061003 + export P_END_DATE + [[ 2015061002 -le 2015061003 ]] + cut -c1-4 + echo 2015061002 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061002 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061002 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061002 + P_HH=02 + export P_HH + P_FILE_DATE=2015-06-10_02:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_02:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_02:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061002_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061002_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061002 1 + 2> /dev/null + P_DATE=2015061003 + export P_DATE + [[ 2015061003 -le 2015061003 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061003_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061003_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061003 ]] + CYCLE_DATE=2015061003 + export CYCLE_DATE + [[ 2015061003 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061003 + export DATE + cut -c1-4 + echo 2015061003 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061003 + YY=15 + export YY + cut -c5-6 + echo 2015061003 + MM=06 + export MM + cut -c7-8 + echo 2015061003 + DD=10 + export DD + cut -c9-10 + echo 2015061003 + HH=03 + export HH + DATE_SHORT=15061003 + export DATE_SHORT + FILE_DATE=2015-06-10_03:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -1 + 2> /dev/null + PAST_DATE=2015061002 + export PAST_DATE + cut -c1-4 + echo 2015061002 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061002 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061002 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061002 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061002 + PAST_HH=02 + export PAST_HH + PAST_FILE_DATE=2015-06-10_02:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + NEXT_DATE=2015061004 + export NEXT_DATE + cut -c1-4 + echo 2015061004 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061004 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061004 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061004 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061004 + NEXT_HH=04 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_04:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=03 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 03 + 0 )) + [[ 03 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=03 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 03 + 0 )) + D_DATE=2015061003 + export D_DATE + echo 2015061003 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 10800 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=10800 + export SEC_GREG + echo 2015061004 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 14400 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=14400 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100230 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100230 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100230 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100230 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100230 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100230 + ASIM_MIN_HH=02 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100330 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100330 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100330 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100330 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100330 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100330 + ASIM_MAX_HH=03 + export ASIM_MAX_HH + echo 201506100230 201506100230 + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=9000 + export ASIM_MIN_SEC_GREG + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=12600 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=false + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=false + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=false + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=false + export RUN_PREPROCESS_OBS + [[ 2015061003 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061003 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + END_DATE=2015061004 + export END_DATE + cut -c1-4 + echo 2015061003 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061003 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061003 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061003 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061003 + START_HOUR=03 + export START_HOUR + START_FILE_DATE=2015-06-10_03:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061004 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061004 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061004 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061004 + END_HOUR=04 + export END_HOUR + END_FILE_DATE=2015-06-10_04:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061002/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=03,03,03 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=04,04,04 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100230 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 9000 + (( temp[1]=9000+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=9001 + export NL_FIRST_OBS_SECONDS + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=12600 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061003 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=3 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=3 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=14400 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100230 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100330 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100230 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100230 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100230 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100230 + ASIM_MN_HH=02 + export ASIM_MN_HH + cut -c1-4 + echo 201506100330 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100330 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100330 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100330 + ASIM_MX_HH=03 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + E_DATE=2015061004 + export E_DATE + cut -c1-4 + echo 2015061004 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061004 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061004 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061004 + E_HH=04 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + P_DATE=2015061003 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 2 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061003 -le 2015061005 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + P_DATE=2015061003 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061003 -le 2015061004 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31974 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_26823.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149212 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061004 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + cut -c1-4 + echo 2015061004 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061004 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061004 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061004 + L_START_HOUR=04 + export L_START_HOUR + cut -c1-4 + echo 2015061005 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061005 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061005 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061005 + L_END_HOUR=05 + export L_END_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_START_HOUR=04,04,04 + export NL_START_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_END_HOUR=05,05,05 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32087 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_19686.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149218 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061003 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + cut -c1-4 + echo 2015061003 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061003 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061003 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061003 + L_START_HOUR=03 + export L_START_HOUR + cut -c1-4 + echo 2015061004 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061004 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061004 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061004 + L_END_HOUR=04 + export L_END_HOUR + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + cut -c1-4 + echo 2015061003 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + cut -c5-6 + echo 2015061003 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + cut -c7-8 + echo 2015061003 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + cut -c9-10 + echo 2015061003 + NL_START_HOUR=03,03,03 + export NL_START_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_END_HOUR=04,04,04 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\',\'2015-06-10_03:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_END_DATE + P_DATE=2015061003 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061003 -le 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_03:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_02:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32349 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2590.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149223 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32363 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29008.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149224 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32376 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14552.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149225 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32404 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10702.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149226 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32417 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21069.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149227 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32430 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29783.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149228 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32458 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3448.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149229 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32471 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17065.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149230 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32486 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3351.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149231 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32513 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27999.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149232 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32528 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12176.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149233 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32541 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12372.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149234 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32568 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17093.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149235 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17666.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149236 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32595 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27180.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149237 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32623 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26017.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149238 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32636 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2497.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149239 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32653 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27804.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149240 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32681 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17713.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149241 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32694 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17059.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149242 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32708 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21495.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149243 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32735 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11599.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149244 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32748 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1333.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149245 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32762 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20069.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149246 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=326 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30421.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149247 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=341 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32100.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149248 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=358 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_373.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149249 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=390 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10924.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149250 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=404 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3386.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149251 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_03:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_03:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_02:30:00', / &wrfvar22 time_window_max = '2015-06-10_03:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_03:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=417 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31015.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149252 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_03:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_03:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_04:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2590.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=553 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4533.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149254 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29008.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=568 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30804.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149255 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14552.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=582 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2368.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149256 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10702.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=610 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20487.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149257 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21069.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=624 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17975.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149258 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29783.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=637 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1516.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149259 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3448.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=665 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_273.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149260 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17065.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=679 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9676.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149261 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3351.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=693 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7312.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149262 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27999.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=727 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21111.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149263 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12176.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=742 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3004.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149264 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12372.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=755 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4609.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149265 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17093.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=783 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30887.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149266 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17666.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=798 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18886.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149268 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27180.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=811 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11199.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149269 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26017.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=840 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19474.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149270 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2497.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=853 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30978.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149271 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_27804.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=867 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24959.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149272 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17713.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=896 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2714.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149273 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17059.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=910 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2521.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149274 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21495.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=924 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23054.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149275 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11599.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=951 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32225.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149276 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1333.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=965 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14489.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149277 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20069.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=978 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6488.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149278 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30421.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1006 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15712.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149279 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32100.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1019 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18086.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149280 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_373.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1033 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14591.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149281 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10924.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -f hhddmmyycc + NL_SEED_ARRAY1=0310061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061003 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + [[ 03 -ge 00 ]] + [[ 03 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1060 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8673.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149282 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3386.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1074 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21889.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149283 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31015.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0310061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=1087 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25048.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149284 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1525 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4281.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149286 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1750 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_26547.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149287 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2015 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_29440.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149288 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2230 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9288.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149289 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2458 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_25553.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149290 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2688 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18637.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149291 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2913 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_32401.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149292 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3128 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15477.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149293 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3353 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_9714.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149294 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 3, 0, 0, last_bin_center = 2015, 6, 10, 3, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 9001, last_obs_days = 151370, last_obs_seconds = 12600, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 14400, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_END_DATE=2015061004 + export L_END_DATE + TRANDOM=31742 + [[ 2015061003 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + NEXT_L_DATE=2015061004 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_04:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3564 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_23032.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149295 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -lt 2015061004 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_03:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_03:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061003 -eq 2015061003 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf wrfbiochemi_d03 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=3652 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_26785.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149296 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_03:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_03:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061004 -eq 2015061003 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=5571 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_3579.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149368 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_04:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_04:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 3, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=31742 + JOBRND=479_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=479_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=7392 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_11863.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149410 + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_03:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_03:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_03:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_03:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_03:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_03:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_04:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_04:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_04:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_04:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_04:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_03:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_03:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149445 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_03:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_03:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 ./. + mv wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e000 + mv wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_d01_2015-06-10_03:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8112 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8112 rm -f tmp.8112 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set files = ( wrfinput_d01_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8180 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8180 rm -f tmp.8180 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8180 rm -f tmp.8180 if ( wrfinput_d01_2015-06-10_03:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00.e000 echo wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00.e000 ln -s wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_03:00:00.e000 wrfinput_d01_2015-06-10_03:00:00 + mv wrfbdy_d01_2015-06-10_03:00:00.e000 wrfbdy_d01_2015-06-10_03:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8265 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8265 rm -f tmp.8265 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e001 set files = ( wrfinput_d01_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8333 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8333 rm -f tmp.8333 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8333 rm -f tmp.8333 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8416 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8416 rm -f tmp.8416 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e002 set files = ( wrfinput_d01_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8485 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8485 rm -f tmp.8485 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8485 rm -f tmp.8485 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8568 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8568 rm -f tmp.8568 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e003 set files = ( wrfinput_d01_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8635 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8635 rm -f tmp.8635 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8635 rm -f tmp.8635 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8718 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8718 rm -f tmp.8718 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e004 set files = ( wrfinput_d01_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8786 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8786 rm -f tmp.8786 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8786 rm -f tmp.8786 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8872 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8872 rm -f tmp.8872 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e005 set files = ( wrfinput_d01_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8940 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8940 rm -f tmp.8940 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8940 rm -f tmp.8940 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9022 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9022 rm -f tmp.9022 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e006 set files = ( wrfinput_d01_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9090 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9090 rm -f tmp.9090 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9090 rm -f tmp.9090 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9172 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9172 rm -f tmp.9172 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e007 set files = ( wrfinput_d01_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9239 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9239 rm -f tmp.9239 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9239 rm -f tmp.9239 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9321 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9321 rm -f tmp.9321 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e008 set files = ( wrfinput_d01_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9389 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9389 rm -f tmp.9389 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9389 rm -f tmp.9389 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9472 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9472 rm -f tmp.9472 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e009 set files = ( wrfinput_d01_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9539 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9539 rm -f tmp.9539 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9539 rm -f tmp.9539 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_03:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_03:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9621 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9621 rm -f tmp.9621 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_03:00:00.e010 set files = ( wrfinput_d01_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_03:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.9689 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9689 rm -f tmp.9689 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_03:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9689 rm -f tmp.9689 if ( wrfinput_d01_2015-06-10_03:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 echo wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e010 ln -s wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_03:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_03:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_03:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149473 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_03:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 ./. + mv wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02_2015-06-10_03:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9811 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.9811 rm -f tmp.9811 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e000 set files = ( wrfinput_d02_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_03:00:00.e000 wrfinput_d02_2015-06-10_03:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9886 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9886 rm -f tmp.9886 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e001 set files = ( wrfinput_d02_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9959 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9959 rm -f tmp.9959 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e002 set files = ( wrfinput_d02_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10031 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10031 rm -f tmp.10031 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e003 set files = ( wrfinput_d02_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10103 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.10103 rm -f tmp.10103 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e004 set files = ( wrfinput_d02_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10175 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.10175 rm -f tmp.10175 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e005 set files = ( wrfinput_d02_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10247 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.10247 rm -f tmp.10247 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e006 set files = ( wrfinput_d02_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10319 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10319 rm -f tmp.10319 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e007 set files = ( wrfinput_d02_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10395 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10395 rm -f tmp.10395 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e008 set files = ( wrfinput_d02_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10470 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10470 rm -f tmp.10470 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e009 set files = ( wrfinput_d02_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_03:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.10542 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10542 rm -f tmp.10542 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_03:00:00.e010 set files = ( wrfinput_d02_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_03:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_03:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_03:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149481 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_03:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 ./. + mv wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03_2015-06-10_03:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10781 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_03:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.10781 rm -f tmp.10781 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e000 set files = ( wrfinput_d03_2015-06-10_03:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_03:00:00.e000 wrfinput_d03_2015-06-10_03:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=03 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10855 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_03:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.10855 rm -f tmp.10855 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e001 set files = ( wrfinput_d03_2015-06-10_03:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10927 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_03:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.10927 rm -f tmp.10927 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e002 set files = ( wrfinput_d03_2015-06-10_03:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10999 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_03:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.10999 rm -f tmp.10999 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e003 set files = ( wrfinput_d03_2015-06-10_03:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11071 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_03:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.11071 rm -f tmp.11071 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e004 set files = ( wrfinput_d03_2015-06-10_03:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11143 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_03:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.11143 rm -f tmp.11143 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e005 set files = ( wrfinput_d03_2015-06-10_03:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11216 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_03:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.11216 rm -f tmp.11216 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e006 set files = ( wrfinput_d03_2015-06-10_03:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11288 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_03:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.11288 rm -f tmp.11288 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e007 set files = ( wrfinput_d03_2015-06-10_03:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11360 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_03:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.11360 rm -f tmp.11360 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e008 set files = ( wrfinput_d03_2015-06-10_03:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11432 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_03:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.11432 rm -f tmp.11432 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e009 set files = ( wrfinput_d03_2015-06-10_03:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_03:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.11504 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_03:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.11504 rm -f tmp.11504 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_03:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_03:00:00.e010 set files = ( wrfinput_d03_2015-06-10_03:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_03:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_03:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_03:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_03:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01_2015-06-10_03:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfbdy_d01_2015-06-10_03:00:00 wrfbdy_d01_2015-06-10_03:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02_2015-06-10_03:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03_2015-06-10_03:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01_2015-06-10_03:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01_2015-06-10_03:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e001 wrfinput_d02_2015-06-10_03:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e001 wrfinput_d03_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01_2015-06-10_03:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01_2015-06-10_03:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e002 wrfinput_d02_2015-06-10_03:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e002 wrfinput_d03_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01_2015-06-10_03:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01_2015-06-10_03:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e003 wrfinput_d02_2015-06-10_03:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e003 wrfinput_d03_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01_2015-06-10_03:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01_2015-06-10_03:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e004 wrfinput_d02_2015-06-10_03:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e004 wrfinput_d03_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01_2015-06-10_03:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01_2015-06-10_03:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e005 wrfinput_d02_2015-06-10_03:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e005 wrfinput_d03_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01_2015-06-10_03:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01_2015-06-10_03:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e006 wrfinput_d02_2015-06-10_03:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e006 wrfinput_d03_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01_2015-06-10_03:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01_2015-06-10_03:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e007 wrfinput_d02_2015-06-10_03:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e007 wrfinput_d03_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01_2015-06-10_03:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01_2015-06-10_03:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e008 wrfinput_d02_2015-06-10_03:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e008 wrfinput_d03_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01_2015-06-10_03:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01_2015-06-10_03:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e009 wrfinput_d02_2015-06-10_03:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e009 wrfinput_d03_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_03:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_03:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01_2015-06-10_03:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_bc/wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01_2015-06-10_03:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_03:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d02_2015-06-10_03:00:00.e010 wrfinput_d02_2015-06-10_03:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_03:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_met_ic/wrfinput_d03_2015-06-10_03:00:00.e010 wrfinput_d03_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061003 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + LE_DATE=2015061004 + export LE_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061003 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061003 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061003 + L_HH=03 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_03:00:00 wrfchemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_03:00:00 wrffirechemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_03:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_03:00:00 wrfbiochemi_d01_2015-06-10_03:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12002 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_11717.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149487 + WRFCHEMI=wrfchemi_d02_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_03:00:00 wrfchemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_03:00:00 wrffirechemi_d02_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_03:00:00 wrfbiochemi_d02_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12183 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_19307.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149488 + WRFCHEMI=wrfchemi_d03_2015-06-10_03:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_03:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_03:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_03:00:00 wrfchemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_03:00:00 wrffirechemi_d03_2015-06-10_03:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_03:00:00 wrfbiochemi_d03_2015-06-10_03:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_03:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_03:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_03:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12247 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_27548.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149490 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061003 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12477 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17725.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149491 + WRFCHEMI=wrfchemi_d02_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12529 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_12596.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149492 + WRFCHEMI=wrfchemi_d03_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_03:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12594 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_21776.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149493 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_03:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_03:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + false + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + TRANDOM=31742 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e001 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e001 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e001 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e001 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e001 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e001 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e001 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e001 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e001 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e001 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e001 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e001 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e001 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e001 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e001 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e001 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e001 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13961 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_4273.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149510 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e002 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e002 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e002 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e002 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e002 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e002 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e002 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e002 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e002 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e002 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e002 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e002 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e002 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e002 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e002 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e002 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e002 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e002 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14083 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_19635.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149511 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e003 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e003 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e003 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e003 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e003 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e003 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e003 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e003 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e003 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e003 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e003 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e003 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e003 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e003 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e003 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e003 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e003 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e003 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14202 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32189.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149512 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e004 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e004 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e004 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e004 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e004 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e004 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e004 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e004 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e004 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e004 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e004 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e004 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e004 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e004 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e004 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e004 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e004 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e004 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14321 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_21368.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149513 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e005 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e005 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e005 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e005 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e005 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e005 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e005 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e005 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e005 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e005 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e005 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e005 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e005 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e005 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e005 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e005 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e005 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e005 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14444 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_2704.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149514 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e006 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e006 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e006 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e006 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e006 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e006 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e006 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e006 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e006 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e006 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e006 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e006 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e006 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e006 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e006 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e006 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e006 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e006 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14566 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29224.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149515 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e007 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e007 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e007 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e007 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e007 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e007 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e007 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e007 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e007 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e007 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e007 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e007 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e007 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e007 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e007 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e007 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e007 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e007 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14807 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_11266.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149516 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e008 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e008 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e008 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e008 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e008 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e008 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e008 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e008 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e008 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e008 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e008 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e008 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e008 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e008 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e008 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e008 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e008 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e008 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14925 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_21578.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149517 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e009 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e009 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e009 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e009 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e009 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e009 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e009 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e009 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e009 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e009 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e009 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e009 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e009 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e009 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e009 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e009 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e009 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e009 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15045 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32361.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149518 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_initial + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061003 + export L_DATE + [[ 2015061003 -le 2015061004 ]] + echo 2015061003 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061003 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061003 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061003 + cut -c9-10 + L_HH=03 + export L_HH + L_FILE_DATE=2015-06-10_03:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_03:00:00.e010 wrfbiochemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_03:00:00.e010 wrfbiochemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_03:00:00.e010 wrfbiochemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_03:00:00.e010 wrffirechemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_03:00:00.e010 wrffirechemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_03:00:00.e010 wrffirechemi_d03_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_03:00:00.e010 wrfchemi_d01_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_03:00:00.e010 wrfchemi_d02_2015-06-10_03:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_03:00:00.e010 wrfchemi_d03_2015-06-10_03:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 +1 + 2> /dev/null + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061004 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e010 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e010 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e010 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e010 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e010 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e010 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e010 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061004 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_03:00:00.e010 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_03:00:00.e010 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 03,03,03, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 04,04,04, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15168 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_25832.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149519 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e001 wrfbdy_d01_2015-06-10_03:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e002 wrfbdy_d01_2015-06-10_03:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e003 wrfbdy_d01_2015-06-10_03:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e004 wrfbdy_d01_2015-06-10_03:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e005 wrfbdy_d01_2015-06-10_03:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e006 wrfbdy_d01_2015-06-10_03:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e007 wrfbdy_d01_2015-06-10_03:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e008 wrfbdy_d01_2015-06-10_03:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e009 wrfbdy_d01_2015-06-10_03:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_03:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_03:00:00.e010 wrfbdy_d01_2015-06-10_03:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_03:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d03_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e001 wrfinput_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e001 wrfbdy_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e001’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e002 wrfinput_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e002 wrfbdy_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e002’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e003 wrfinput_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e003 wrfbdy_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e003’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e004 wrfinput_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e004 wrfbdy_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e004’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e005 wrfinput_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e005 wrfbdy_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e005’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e006 wrfinput_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e006 wrfbdy_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e006’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e007 wrfinput_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e007 wrfbdy_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e007’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e008 wrfinput_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e008 wrfbdy_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e008’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e009 wrfinput_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e009 wrfbdy_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e009’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061003 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e010 wrfinput_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/dart_filter/wrfout_d01_2015-06-10_03:00:00_filt.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e010 wrfbdy_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/update_bc/wrfbdy_d01_2015-06-10_03:00:00_filt.e010’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/real/wrfinput_d03_2015-06-10_03:00:00 wrfinput_d03_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean ncea: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean ncea: ERROR file wrfbdy_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 ncecat: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncecat: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 ncwa: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncwa: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 ncbo: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncbo: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd ncra: ERROR file wrfinput_d01_tmp3 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncra: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf 'wrfinput_d01_*0*' + rm -rf 'wrfbdy_d01_*0*' + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/ensemble_mean_output + [[ 2015061003 -eq 2015061000 ]] + OUTPUT_DIR_CR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr + export OUTPUT_DIR_CR + OUTPUT_DIR_MR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr + export OUTPUT_DIR_MR + rm -rf 'wrfout_d01_*' + rm -rf 'wrfout_d02_*' + P_DATE=2015061003 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_END_DATE=2015061004 + export P_END_DATE + [[ 2015061003 -le 2015061004 ]] + cut -c1-4 + echo 2015061003 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061003 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061003 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061003 + P_HH=03 + export P_HH + P_FILE_DATE=2015-06-10_03:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_03:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_03:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061003_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061003_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061003 1 + 2> /dev/null + P_DATE=2015061004 + export P_DATE + [[ 2015061004 -le 2015061004 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061004_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061004_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061004 ]] + CYCLE_DATE=2015061004 + export CYCLE_DATE + [[ 2015061004 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061004 + export DATE + cut -c1-4 + echo 2015061004 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061004 + YY=15 + export YY + cut -c5-6 + echo 2015061004 + MM=06 + export MM + cut -c7-8 + echo 2015061004 + DD=10 + export DD + cut -c9-10 + echo 2015061004 + HH=04 + export HH + DATE_SHORT=15061004 + export DATE_SHORT + FILE_DATE=2015-06-10_04:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -1 + 2> /dev/null + PAST_DATE=2015061003 + export PAST_DATE + cut -c1-4 + echo 2015061003 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061003 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061003 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061003 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061003 + PAST_HH=03 + export PAST_HH + PAST_FILE_DATE=2015-06-10_03:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + NEXT_DATE=2015061005 + export NEXT_DATE + cut -c1-4 + echo 2015061005 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061005 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061005 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061005 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061005 + NEXT_HH=05 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_05:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=04 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 04 + 0 )) + [[ 04 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=04 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 04 + 0 )) + D_DATE=2015061004 + export D_DATE + echo 2015061004 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 14400 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=14400 + export SEC_GREG + echo 2015061005 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 18000 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=18000 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100330 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100330 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100330 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100330 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100330 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100330 + ASIM_MIN_HH=03 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100430 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100430 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100430 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100430 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100430 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100430 + ASIM_MAX_HH=04 + export ASIM_MAX_HH + echo 201506100330 201506100330 + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=12600 + export ASIM_MIN_SEC_GREG + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=16200 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=false + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=false + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=false + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=false + export RUN_PREPROCESS_OBS + [[ 2015061004 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061004 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + END_DATE=2015061005 + export END_DATE + cut -c1-4 + echo 2015061004 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061004 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061004 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061004 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061004 + START_HOUR=04 + export START_HOUR + START_FILE_DATE=2015-06-10_04:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061005 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061005 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061005 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061005 + END_HOUR=05 + export END_HOUR + END_FILE_DATE=2015-06-10_05:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061003/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=04,04,04 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=05,05,05 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100330 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 12600 + (( temp[1]=12600+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=12601 + export NL_FIRST_OBS_SECONDS + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=16200 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061004 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=4 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=4 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=18000 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100330 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100430 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100330 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100330 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100330 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100330 + ASIM_MN_HH=03 + export ASIM_MN_HH + cut -c1-4 + echo 201506100430 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100430 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100430 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100430 + ASIM_MX_HH=04 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + E_DATE=2015061005 + export E_DATE + cut -c1-4 + echo 2015061005 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061005 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061005 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061005 + E_HH=05 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + P_DATE=2015061004 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 2 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061004 -le 2015061006 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + P_DATE=2015061004 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061004 -le 2015061005 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061004 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + cut -c1-4 + echo 2015061004 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061004 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061004 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061004 + L_START_HOUR=04 + export L_START_HOUR + cut -c1-4 + echo 2015061005 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061005 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061005 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061005 + L_END_HOUR=05 + export L_END_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_START_HOUR=04,04,04 + export NL_START_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_END_HOUR=05,05,05 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30830 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_11661.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149911 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061005 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061005 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061005 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061005 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061005 + L_START_HOUR=05 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_START_HOUR=05,05,05 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30945 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_5557.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1149912 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061004 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + cut -c1-4 + echo 2015061004 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061004 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061004 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061004 + L_START_HOUR=04 + export L_START_HOUR + cut -c1-4 + echo 2015061005 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061005 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061005 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061005 + L_END_HOUR=05 + export L_END_HOUR + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + cut -c1-4 + echo 2015061004 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + cut -c5-6 + echo 2015061004 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + cut -c7-8 + echo 2015061004 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + cut -c9-10 + echo 2015061004 + NL_START_HOUR=04,04,04 + export NL_START_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_END_HOUR=05,05,05 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\',\'2015-06-10_04:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_END_DATE + P_DATE=2015061004 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061004 -le 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_04:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_03:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31083 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149913 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31097 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14405.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149914 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31111 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10803.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149915 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31138 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18311.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149916 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31151 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14772.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149917 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31165 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3229.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149918 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31192 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29456.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149919 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31206 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26456.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149920 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31219 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26663.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149921 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31246 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_557.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149922 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31260 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9161.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149923 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31273 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4404.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149924 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31301 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3145.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149925 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31314 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25577.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149926 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31327 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24045.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149927 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31355 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32225.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149928 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31368 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9217.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149929 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31382 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2591.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149930 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31409 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9646.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149931 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31422 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9823.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149932 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31436 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30619.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149933 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31463 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6742.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149934 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31477 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4227.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149935 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31490 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4933.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149936 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31519 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17999.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149937 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31532 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1887.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149938 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31547 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_32482.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149939 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31574 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24523.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149940 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31588 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1483.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149941 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_04:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_04:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_03:30:00', / &wrfvar22 time_window_max = '2015-06-10_04:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_04:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31601 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3195.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149942 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_04:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_04:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_05:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31302.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31871 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30721.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149943 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14405.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31889 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18362.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149944 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_10803.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31903 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27671.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149945 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18311.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31932 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21301.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149946 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_14772.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31946 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19456.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149947 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3229.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31960 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149948 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29456.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=31988 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8353.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149949 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26456.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32001 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_3075.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149950 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26663.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32015 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17438.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149951 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_557.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32043 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8694.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149952 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9161.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32056 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_30013.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149953 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4404.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32070 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16453.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149954 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3145.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32098 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22302.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149955 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_25577.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32111 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13080.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149956 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24045.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32125 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16223.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149958 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32225.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32152 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10582.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149959 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9217.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32166 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8266.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149960 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2591.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32180 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20295.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149961 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9646.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32208 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12174.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149962 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9823.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32221 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15316.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149963 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_30619.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32235 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16275.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149964 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6742.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32263 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13008.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149965 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4227.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32276 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_7726.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149966 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4933.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32290 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13451.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149967 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_17999.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32318 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27574.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149968 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1887.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32331 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24059.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149969 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_32482.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32345 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28360.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149970 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_24523.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -f hhddmmyycc + NL_SEED_ARRAY1=0410061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061004 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + [[ 04 -ge 00 ]] + [[ 04 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32372 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28264.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149971 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_1483.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32386 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28285.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149972 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_3195.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0410061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=32399 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11711.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149973 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32705 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_18315.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149985 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=462 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_15198.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149986 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=674 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_4089.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149987 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=900 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5457.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149992 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1239 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_13889.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1149999 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1452 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_6117.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150000 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1685 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_22604.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150001 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=1944 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_21642.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150002 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2166 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_10146.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150003 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 4, 0, 0, last_bin_center = 2015, 6, 10, 4, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 12601, last_obs_days = 151370, last_obs_seconds = 16200, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 18000, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_END_DATE=2015061005 + export L_END_DATE + TRANDOM=31742 + [[ 2015061004 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + NEXT_L_DATE=2015061005 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_05:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2389 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_11137.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150004 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -lt 2015061005 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_04:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_04:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061004 -eq 2015061004 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf wrfbiochemi_d03 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2488 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_26978.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150008 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_04:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_04:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061005 -eq 2015061004 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4342 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_7725.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150098 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_05:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_05:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 3, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=31742 + JOBRND=479_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=479_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=6261 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_8460.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150173 + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_04:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_04:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_04:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_04:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_04:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_04:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_05:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_05:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_05:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_05:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_05:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_04:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_04:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150182 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_04:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_04:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 ./. + mv wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e000 + mv wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_d01_2015-06-10_04:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6839 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.6839 rm -f tmp.6839 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set files = ( wrfinput_d01_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6908 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.6908 rm -f tmp.6908 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.6908 rm -f tmp.6908 if ( wrfinput_d01_2015-06-10_04:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00.e000 echo wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00.e000 ln -s wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_04:00:00.e000 wrfinput_d01_2015-06-10_04:00:00 + mv wrfbdy_d01_2015-06-10_04:00:00.e000 wrfbdy_d01_2015-06-10_04:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6995 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.6995 rm -f tmp.6995 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e001 set files = ( wrfinput_d01_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7065 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.7065 rm -f tmp.7065 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.7065 rm -f tmp.7065 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7148 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.7148 rm -f tmp.7148 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e002 set files = ( wrfinput_d01_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7215 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.7215 rm -f tmp.7215 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.7215 rm -f tmp.7215 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7298 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.7298 rm -f tmp.7298 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e003 set files = ( wrfinput_d01_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7366 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.7366 rm -f tmp.7366 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.7366 rm -f tmp.7366 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7448 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.7448 rm -f tmp.7448 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e004 set files = ( wrfinput_d01_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7516 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.7516 rm -f tmp.7516 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.7516 rm -f tmp.7516 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7603 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.7603 rm -f tmp.7603 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e005 set files = ( wrfinput_d01_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7671 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.7671 rm -f tmp.7671 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.7671 rm -f tmp.7671 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7755 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.7755 rm -f tmp.7755 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e006 set files = ( wrfinput_d01_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7822 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.7822 rm -f tmp.7822 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.7822 rm -f tmp.7822 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7904 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.7904 rm -f tmp.7904 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e007 set files = ( wrfinput_d01_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7972 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.7972 rm -f tmp.7972 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.7972 rm -f tmp.7972 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8055 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.8055 rm -f tmp.8055 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e008 set files = ( wrfinput_d01_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8123 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.8123 rm -f tmp.8123 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.8123 rm -f tmp.8123 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8205 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.8205 rm -f tmp.8205 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e009 set files = ( wrfinput_d01_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8273 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.8273 rm -f tmp.8273 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.8273 rm -f tmp.8273 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_04:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_04:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8355 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.8355 rm -f tmp.8355 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_04:00:00.e010 set files = ( wrfinput_d01_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_04:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.8423 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.8423 rm -f tmp.8423 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_04:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.8423 rm -f tmp.8423 if ( wrfinput_d01_2015-06-10_04:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 echo wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e010 ln -s wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_04:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_04:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_04:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150184 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_04:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 ./. + mv wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02_2015-06-10_04:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8549 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.8549 rm -f tmp.8549 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e000 set files = ( wrfinput_d02_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_04:00:00.e000 wrfinput_d02_2015-06-10_04:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8623 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8623 rm -f tmp.8623 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e001 set files = ( wrfinput_d02_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8695 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8695 rm -f tmp.8695 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e002 set files = ( wrfinput_d02_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8769 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8769 rm -f tmp.8769 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e003 set files = ( wrfinput_d02_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8842 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8842 rm -f tmp.8842 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e004 set files = ( wrfinput_d02_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8918 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8918 rm -f tmp.8918 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e005 set files = ( wrfinput_d02_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.8990 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8990 rm -f tmp.8990 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e006 set files = ( wrfinput_d02_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9062 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.9062 rm -f tmp.9062 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e007 set files = ( wrfinput_d02_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9135 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.9135 rm -f tmp.9135 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e008 set files = ( wrfinput_d02_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9207 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.9207 rm -f tmp.9207 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e009 set files = ( wrfinput_d02_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_04:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.9342 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.9342 rm -f tmp.9342 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_04:00:00.e010 set files = ( wrfinput_d02_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_04:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_04:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_04:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150185 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_04:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 ./. + mv wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03_2015-06-10_04:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9515 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_04:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.9515 rm -f tmp.9515 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e000 set files = ( wrfinput_d03_2015-06-10_04:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_04:00:00.e000 wrfinput_d03_2015-06-10_04:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=04 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9590 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= echo TYPE=IC grep --color=auto MOZBC_INP= if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_04:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.9590 rm -f tmp.9590 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e001 set files = ( wrfinput_d03_2015-06-10_04:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9662 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_04:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.9662 rm -f tmp.9662 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e002 set files = ( wrfinput_d03_2015-06-10_04:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9735 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_04:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.9735 rm -f tmp.9735 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e003 set files = ( wrfinput_d03_2015-06-10_04:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9807 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_04:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.9807 rm -f tmp.9807 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e004 set files = ( wrfinput_d03_2015-06-10_04:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9880 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_04:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.9880 rm -f tmp.9880 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e005 set files = ( wrfinput_d03_2015-06-10_04:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.9952 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_04:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.9952 rm -f tmp.9952 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e006 set files = ( wrfinput_d03_2015-06-10_04:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10024 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_04:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.10024 rm -f tmp.10024 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e007 set files = ( wrfinput_d03_2015-06-10_04:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10096 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_04:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.10096 rm -f tmp.10096 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e008 set files = ( wrfinput_d03_2015-06-10_04:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10168 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_04:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.10168 rm -f tmp.10168 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e009 set files = ( wrfinput_d03_2015-06-10_04:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_04:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.10240 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_04:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.10240 rm -f tmp.10240 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_04:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_04:00:00.e010 set files = ( wrfinput_d03_2015-06-10_04:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_04:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_04:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_04:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_04:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01_2015-06-10_04:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfbdy_d01_2015-06-10_04:00:00 wrfbdy_d01_2015-06-10_04:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02_2015-06-10_04:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03_2015-06-10_04:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01_2015-06-10_04:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01_2015-06-10_04:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e001 wrfinput_d02_2015-06-10_04:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e001 wrfinput_d03_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01_2015-06-10_04:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01_2015-06-10_04:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e002 wrfinput_d02_2015-06-10_04:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e002 wrfinput_d03_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01_2015-06-10_04:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01_2015-06-10_04:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e003 wrfinput_d02_2015-06-10_04:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e003 wrfinput_d03_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01_2015-06-10_04:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01_2015-06-10_04:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e004 wrfinput_d02_2015-06-10_04:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e004 wrfinput_d03_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01_2015-06-10_04:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01_2015-06-10_04:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e005 wrfinput_d02_2015-06-10_04:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e005 wrfinput_d03_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01_2015-06-10_04:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01_2015-06-10_04:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e006 wrfinput_d02_2015-06-10_04:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e006 wrfinput_d03_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01_2015-06-10_04:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01_2015-06-10_04:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e007 wrfinput_d02_2015-06-10_04:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e007 wrfinput_d03_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01_2015-06-10_04:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01_2015-06-10_04:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e008 wrfinput_d02_2015-06-10_04:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e008 wrfinput_d03_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01_2015-06-10_04:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01_2015-06-10_04:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e009 wrfinput_d02_2015-06-10_04:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e009 wrfinput_d03_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_04:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_04:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01_2015-06-10_04:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_bc/wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01_2015-06-10_04:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_04:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d02_2015-06-10_04:00:00.e010 wrfinput_d02_2015-06-10_04:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_04:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_met_ic/wrfinput_d03_2015-06-10_04:00:00.e010 wrfinput_d03_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061004 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + LE_DATE=2015061005 + export LE_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061004 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061004 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061004 + L_HH=04 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_04:00:00 wrfchemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_04:00:00 wrffirechemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_04:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_04:00:00 wrfbiochemi_d01_2015-06-10_04:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10860 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25768.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150188 + WRFCHEMI=wrfchemi_d02_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_04:00:00 wrfchemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_04:00:00 wrffirechemi_d02_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_04:00:00 wrfbiochemi_d02_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10911 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_16857.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150189 + WRFCHEMI=wrfchemi_d03_2015-06-10_04:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_04:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_04:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_04:00:00 wrfchemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_04:00:00 wrffirechemi_d03_2015-06-10_04:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_04:00:00 wrfbiochemi_d03_2015-06-10_04:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_04:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_04:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_04:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=10975 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_1250.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150190 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061004 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11206 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_32145.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150191 + WRFCHEMI=wrfchemi_d02_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11260 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17218.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150192 + WRFCHEMI=wrfchemi_d03_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_04:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11453 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_3486.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150193 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_04:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_04:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + false + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + TRANDOM=31742 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e001 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e001 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e001 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e001 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e001 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e001 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e001 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e001 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e001 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e001 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e001 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e001 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e001 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e001 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e001 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e001 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e001 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12675 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_7358.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150236 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e002 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e002 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e002 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e002 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e002 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e002 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e002 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e002 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e002 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e002 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e002 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e002 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e002 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e002 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e002 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e002 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e002 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e002 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=12841 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_30808.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150237 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e003 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e003 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e003 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e003 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e003 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e003 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e003 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e003 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e003 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e003 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e003 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e003 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e003 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e003 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e003 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e003 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e003 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e003 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13046 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_10421.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150238 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e004 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e004 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e004 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e004 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e004 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e004 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e004 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e004 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e004 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e004 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e004 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e004 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e004 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e004 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e004 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e004 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e004 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e004 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13167 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_21806.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150239 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e005 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e005 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e005 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e005 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e005 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e005 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e005 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e005 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e005 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e005 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e005 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e005 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e005 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e005 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e005 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e005 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e005 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e005 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13298 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_438.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150240 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e006 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e006 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e006 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e006 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e006 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e006 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e006 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e006 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e006 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e006 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e006 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e006 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e006 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e006 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e006 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e006 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e006 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e006 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13418 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24872.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150241 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e007 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e007 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e007 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e007 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e007 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e007 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e007 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e007 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e007 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e007 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e007 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e007 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e007 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e007 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e007 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e007 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e007 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e007 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13536 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26205.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150243 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e008 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e008 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e008 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e008 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e008 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e008 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e008 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e008 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e008 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e008 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e008 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e008 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e008 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e008 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e008 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e008 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e008 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e008 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13660 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_26635.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150244 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e009 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e009 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e009 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e009 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e009 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e009 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e009 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e009 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e009 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e009 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e009 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e009 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e009 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e009 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e009 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e009 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e009 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e009 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13778 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_22056.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150245 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_initial + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061004 + export L_DATE + [[ 2015061004 -le 2015061005 ]] + echo 2015061004 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061004 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061004 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061004 + cut -c9-10 + L_HH=04 + export L_HH + L_FILE_DATE=2015-06-10_04:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_04:00:00.e010 wrfbiochemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_04:00:00.e010 wrfbiochemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_04:00:00.e010 wrfbiochemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_04:00:00.e010 wrffirechemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_04:00:00.e010 wrffirechemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_04:00:00.e010 wrffirechemi_d03_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_04:00:00.e010 wrfchemi_d01_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_04:00:00.e010 wrfchemi_d02_2015-06-10_04:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_04:00:00.e010 wrfchemi_d03_2015-06-10_04:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 +1 + 2> /dev/null + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061005 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e010 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e010 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e010 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e010 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e010 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e010 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e010 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061005 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_04:00:00.e010 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_04:00:00.e010 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 04,04,04, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 05,05,05, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=13896 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_29625.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150246 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e001 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e001 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e001 wrfbdy_d01_2015-06-10_04:00:00_prior.e001 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e001 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e001 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e002 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e002 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e002 wrfbdy_d01_2015-06-10_04:00:00_prior.e002 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e002 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e002 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e003 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e003 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e003 wrfbdy_d01_2015-06-10_04:00:00_prior.e003 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e003 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e003 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e004 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e004 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e004 wrfbdy_d01_2015-06-10_04:00:00_prior.e004 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e004 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e004 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e005 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e005 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e005 wrfbdy_d01_2015-06-10_04:00:00_prior.e005 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e005 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e005 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e006 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e006 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e006 wrfbdy_d01_2015-06-10_04:00:00_prior.e006 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e006 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e006 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e007 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e007 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e007 wrfbdy_d01_2015-06-10_04:00:00_prior.e007 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e007 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e007 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e008 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e008 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e008 wrfbdy_d01_2015-06-10_04:00:00_prior.e008 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e008 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e008 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e009 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e009 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e009 wrfbdy_d01_2015-06-10_04:00:00_prior.e009 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e009 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e009 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + CYCLING=true + export CYCLING + OPS_FORC_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_04:00:00.e010 + export OPS_FORC_FILE + BDYCDN_IN=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e010 + export BDYCDN_IN + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_04:00:00.e010 wrfbdy_d01_2015-06-10_04:00:00_prior.e010 + DA_OUTPUT_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e010 + export DA_OUTPUT_FILE + BDYCDN_OUT=wrfbdy_d01_2015-06-10_04:00:00_filt.e010 + export BDYCDN_OUT + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_update_bc.ksh + 1> index_update_bc 2>& 1 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_input ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_input + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_input + rm -rf wrfinput_d01_mean + rm -rf wrfbdy_d01_mean + rm -rf wrfinput_d03_mean + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e001 wrfinput_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e001’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e001 wrfbdy_d01_0001 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e001’: No such file or directory + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e002 wrfinput_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e002’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e002 wrfbdy_d01_0002 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e002’: No such file or directory + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e003 wrfinput_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e003’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e003 wrfbdy_d01_0003 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e003’: No such file or directory + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e004 wrfinput_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e004’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e004 wrfbdy_d01_0004 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e004’: No such file or directory + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e005 wrfinput_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e005’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e005 wrfbdy_d01_0005 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e005’: No such file or directory + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e006 wrfinput_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e006’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e006 wrfbdy_d01_0006 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e006’: No such file or directory + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e007 wrfinput_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e007’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e007 wrfbdy_d01_0007 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e007’: No such file or directory + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e008 wrfinput_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e008’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e008 wrfbdy_d01_0008 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e008’: No such file or directory + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e009 wrfinput_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e009’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e009 wrfbdy_d01_0009 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e009’: No such file or directory + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + [[ 2015061004 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e010 wrfinput_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/dart_filter/wrfout_d01_2015-06-10_04:00:00_filt.e010’: No such file or directory + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e010 wrfbdy_d01_0010 cp: cannot stat ‘/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/update_bc/wrfbdy_d01_2015-06-10_04:00:00_filt.e010’: No such file or directory + let MEM=10+1 + [[ 11 -le 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/real/wrfinput_d03_2015-06-10_04:00:00 wrfinput_d03_mean + ncea -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_mean ncea: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfbdy_d01_0001 wrfbdy_d01_mean ncea: ERROR file wrfbdy_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf wrfinput_d01_sprd + ncecat -n 10,4,1 wrfinput_d01_0001 wrfinput_d01_tmp1 ncecat: ERROR file wrfinput_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncecat: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncwa -O -a record wrfinput_d01_tmp1 wrfinput_d01_tmp2 ncwa: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncwa: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncbo '--op_typ=-' wrfinput_d01_tmp1 wrfinput_d01_tmp2 wrfinput_d01_tmp3 ncbo: ERROR file wrfinput_d01_tmp1 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncbo: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncra -y rmssdn wrfinput_d01_tmp3 wrfinput_d01_sprd ncra: ERROR file wrfinput_d01_tmp3 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncra: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + rm -rf 'wrfinput_d01_tmp*' + rm -rf 'wrfinput_d01_*0*' + rm -rf 'wrfbdy_d01_*0*' + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_output ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_output + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/ensemble_mean_output + [[ 2015061004 -eq 2015061000 ]] + OUTPUT_DIR_CR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr + export OUTPUT_DIR_CR + OUTPUT_DIR_MR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr + export OUTPUT_DIR_MR + rm -rf 'wrfout_d01_*' + rm -rf 'wrfout_d02_*' + P_DATE=2015061004 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_END_DATE=2015061005 + export P_END_DATE + [[ 2015061004 -le 2015061005 ]] + cut -c1-4 + echo 2015061004 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061004 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061004 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061004 + P_HH=04 + export P_HH + P_FILE_DATE=2015-06-10_04:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_04:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_04:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061004_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061004_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061004 1 + 2> /dev/null + P_DATE=2015061005 + export P_DATE + [[ 2015061005 -le 2015061005 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00 + export P_FILE_DATE + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + rm -rf wrfout_d01_0001 + rm -rf wrfout_d02_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e001/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0001 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e001/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + rm -rf wrfout_d01_0002 + rm -rf wrfout_d02_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e002/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0002 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e002/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + rm -rf wrfout_d01_0003 + rm -rf wrfout_d02_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e003/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0003 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e003/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + rm -rf wrfout_d01_0004 + rm -rf wrfout_d02_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e004/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0004 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e004/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + rm -rf wrfout_d01_0005 + rm -rf wrfout_d02_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e005/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0005 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e005/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + rm -rf wrfout_d01_0006 + rm -rf wrfout_d02_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e006/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0006 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e006/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + rm -rf wrfout_d01_0007 + rm -rf wrfout_d02_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e007/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0007 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e007/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + rm -rf wrfout_d01_0008 + rm -rf wrfout_d02_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e008/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0008 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e008/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + rm -rf wrfout_d01_0009 + rm -rf wrfout_d02_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e009/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0009 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e009/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfout_d01_0010 + rm -rf wrfout_d02_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr/run_e010/wrfout_d01_2015-06-10_05:00:00 wrfout_d01_0010 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_mr/run_e010/wrfout_d02_2015-06-10_05:00:00 wrfout_d02_0010 + let MEM=10+1 + [[ 11 -le 10 ]] + ncea -n 10,4,1 wrfout_d01_0001 wrfout_d01_2015061005_mean ncea: ERROR file wrfout_d01_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + ncea -n 10,4,1 wrfout_d02_0001 wrfout_d02_2015061005_mean ncea: ERROR file wrfout_d02_0001 not found. It does not exist on the local filesystem, nor does it match remote filename patterns (e.g., http://foo or foo.bar.edu:file). ncea: HINT file-not-found errors usually arise from filename typos, incorrect paths, missing files, or capricious gods. Please verify spelling and location of requested file. If the file resides on a High Performance Storage System (HPSS) accessible via the 'hsi' command, then add the --hpss option and re-try command. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061005 ]] + CYCLE_DATE=2015061005 + export CYCLE_DATE + [[ 2015061005 -le 2015061300 ]] + cd /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME/FINAL_TEST_SCRIPTS/ + DATE=2015061005 + export DATE + cut -c1-4 + echo 2015061005 + YYYY=2015 + export YYYY + cut -c3-4 + echo 2015061005 + YY=15 + export YY + cut -c5-6 + echo 2015061005 + MM=06 + export MM + cut -c7-8 + echo 2015061005 + DD=10 + export DD + cut -c9-10 + echo 2015061005 + HH=05 + export HH + DATE_SHORT=15061005 + export DATE_SHORT + FILE_DATE=2015-06-10_05:00:00 + export FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -1 + 2> /dev/null + PAST_DATE=2015061004 + export PAST_DATE + cut -c1-4 + echo 2015061004 + PAST_YYYY=2015 + export PAST_YYYY + cut -c3-4 + echo 2015061004 + PAST_YY=15 + export PAST_YY + cut -c5-6 + echo 2015061004 + PAST_MM=06 + export PAST_MM + cut -c7-8 + echo 2015061004 + PAST_DD=10 + export PAST_DD + cut -c9-10 + echo 2015061004 + PAST_HH=04 + export PAST_HH + PAST_FILE_DATE=2015-06-10_04:00:00 + export PAST_FILE_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + NEXT_DATE=2015061006 + export NEXT_DATE + cut -c1-4 + echo 2015061006 + NEXT_YYYY=2015 + export NEXT_YYYY + cut -c3-4 + echo 2015061006 + NEXT_YY=15 + export NEXT_YY + cut -c5-6 + echo 2015061006 + NEXT_MM=06 + export NEXT_MM + cut -c7-8 + echo 2015061006 + NEXT_DD=10 + export NEXT_DD + cut -c9-10 + echo 2015061006 + NEXT_HH=06 + export NEXT_HH + NEXT_FILE_DATE=2015-06-10_06:00:00 + export NEXT_FILE_DATE + DT_YYYY=2015 + export DT_YYYY + DT_YY=15 + export DT_YY + DT_MM=06 + export DT_MM + DT_DD=10 + export DT_DD + DT_HH=05 + export DT_HH + (( DT_MM = 06 + 0 )) + (( DT_DD = 10 + 0 )) + (( DT_HH = 05 + 0 )) + [[ 05 -eq 0 ]] + D_YYYY=2015 + export D_YYYY + D_YY=15 + export D_YY + D_MM=06 + export D_MM + D_DD=10 + export D_DD + D_HH=05 + export D_HH + (( DD_MM = 06 + 0 )) + (( DD_DD = 10 + 0 )) + (( DD_HH = 05 + 0 )) + D_DATE=2015061005 + export D_DATE + echo 2015061005 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 18000 + DAY_GREG=151370 + export DAY_GREG + SEC_GREG=18000 + export SEC_GREG + echo 2015061006 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A GREG_DATA 151370 21600 + NEXT_DAY_GREG=151370 + export NEXT_DAY_GREG + NEXT_SEC_GREG=21600 + export NEXT_SEC_GREG + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m + 2> /dev/null + ASIM_MIN_DATE=201506100430 + export ASIM_MIN_DATE + cut -c1-4 + echo 201506100430 + ASIM_MIN_YYYY=2015 + export ASIM_MIN_YYYY + cut -c3-4 + echo 201506100430 + ASIM_MIN_YY=15 + export ASIM_MIN_YY + cut -c5-6 + echo 201506100430 + ASIM_MIN_MM=06 + export ASIM_MIN_MM + cut -c7-8 + echo 201506100430 + ASIM_MIN_DD=10 + export ASIM_MIN_DD + cut -c9-10 + echo 201506100430 + ASIM_MIN_HH=04 + export ASIM_MIN_HH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m + 2> /dev/null + ASIM_MAX_DATE=201506100530 + export ASIM_MAX_DATE + cut -c1-4 + echo 201506100530 + ASIM_MAX_YYYY=2015 + export ASIM_MAX_YYYY + cut -c3-4 + echo 201506100530 + ASIM_MAX_YY=15 + export ASIM_MAX_YY + cut -c5-6 + echo 201506100530 + ASIM_MAX_MM=06 + export ASIM_MAX_MM + cut -c7-8 + echo 201506100530 + ASIM_MAX_DD=10 + export ASIM_MAX_DD + cut -c9-10 + echo 201506100530 + ASIM_MAX_HH=05 + export ASIM_MAX_HH + echo 201506100430 201506100430 + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + ASIM_MIN_DAY_GREG=151370 + export ASIM_MIN_DAY_GREG + ASIM_MIN_SEC_GREG=16200 + export ASIM_MIN_SEC_GREG + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + ASIM_MAX_DAY_GREG=151370 + export ASIM_MAX_DAY_GREG + ASIM_MAX_SEC_GREG=19800 + export ASIM_MAX_SEC_GREG + [[ false == false ]] + RUN_REAL=true + export RUN_REAL + RUN_PERT_WRFCHEM_MET_IC=true + export RUN_PERT_WRFCHEM_MET_IC + RUN_PERT_WRFCHEM_MET_BC=true + export RUN_PERT_WRFCHEM_MET_BC + RUN_EXO_COLDENS=true + export RUN_EXO_COLDENS + RUN_SEASON_WES=true + export RUN_SEASON_WES + RUN_WRFCHEM_BIO=true + export RUN_WRFCHEM_BIO + RUN_WRFCHEM_FIRE=true + export RUN_WRFCHEM_FIRE + RUN_WRFCHEM_CHEMI=true + export RUN_WRFCHEM_CHEMI + RUN_PERT_WRFCHEM_CHEM_ICBC=true + export RUN_PERT_WRFCHEM_CHEM_ICBC + RUN_PERT_WRFCHEM_CHEM_EMISS=true + export RUN_PERT_WRFCHEM_CHEM_EMISS + RUN_AIRNOW_O3_OBS=false + export RUN_AIRNOW_O3_OBS + RUN_TOLNET_O3_OBS=false + export RUN_TOLNET_O3_OBS + RUN_MET_OBS=false + export RUN_MET_OBS + RUN_COMBINE_OBS=false + export RUN_COMBINE_OBS + RUN_PREPROCESS_OBS=false + export RUN_PREPROCESS_OBS + [[ 2015061005 -eq 2015061000 ]] + RUN_WRFCHEM_INITIAL=true + export RUN_WRFCHEM_INITIAL + RUN_DART_FILTER=false + export RUN_DART_FILTER + RUN_UPDATE_BC=true + export RUN_UPDATE_BC + RUN_ENSEMBLE_MEAN_INPUT=true + export RUN_ENSEMBLE_MEAN_INPUT + RUN_WRFCHEM_CYCLE_CR=false + export RUN_WRFCHEM_CYCLE_CR + RUN_BAND_DEPTH=false + export RUN_BAND_DEPTH + RUN_WRFCHEM_CYCLE_MR=false + export RUN_WRFCHEM_CYCLE_MR + RUN_ENSMEAN_CYCLE_MR=false + export RUN_ENSMEAN_CYCLE_MR + RUN_ENSEMBLE_MEAN_OUTPUT=true + export RUN_ENSEMBLE_MEAN_OUTPUT + [[ false == true ]] + USE_DART_INFL=true + export USE_DART_INFL + (( CYCLE_PERIOD_SEC=1*60*60 )) + NUM_MEMBERS=10 + export NUM_MEMBERS + NNZ_CHEM=19 + export NNZ_CHEM + NNCHEM_SPC=37 + export NNCHEM_SPC + NNFIRE_SPC=31 + export NNFIRE_SPC + NNBIO_SPC=1 + export NNBIO_SPC + NZ_CHEMI=19 + export NZ_CHEMI + NZ_FIRECHEMI=1 + export NZ_FIRECHEMI + NCHEMI_EMISS=2 + export NCHEMI_EMISS + NFIRECHEMI_EMISS=7 + export NFIRECHEMI_EMISS + START_DATE=2015061005 + export START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + END_DATE=2015061006 + export END_DATE + cut -c1-4 + echo 2015061005 + START_YEAR=2015 + export START_YEAR + cut -c3-4 + echo 2015061005 + START_YEAR_SHORT=15 + export START_YEAR_SHORT + cut -c5-6 + echo 2015061005 + START_MONTH=06 + export START_MONTH + cut -c7-8 + echo 2015061005 + START_DAY=10 + export START_DAY + cut -c9-10 + echo 2015061005 + START_HOUR=05 + export START_HOUR + START_FILE_DATE=2015-06-10_05:00:00 + export START_FILE_DATE + cut -c1-4 + echo 2015061006 + END_YEAR=2015 + export END_YEAR + cut -c5-6 + echo 2015061006 + END_MONTH=06 + export END_MONTH + cut -c7-8 + echo 2015061006 + END_DAY=10 + export END_DAY + cut -c9-10 + echo 2015061006 + END_HOUR=06 + export END_HOUR + END_FILE_DATE=2015-06-10_06:00:00 + export END_FILE_DATE + REAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export REAL_DIR + WRFCHEM_MET_IC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export WRFCHEM_MET_IC_DIR + WRFCHEM_MET_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc + export WRFCHEM_MET_BC_DIR + EXO_COLDENS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens + export EXO_COLDENS_DIR + SEASONS_WES_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes + export SEASONS_WES_DIR + WRFCHEM_BIO_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio + export WRFCHEM_BIO_DIR + WRFCHEM_FIRE_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire + export WRFCHEM_FIRE_DIR + WRFCHEM_CHEMI_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi + export WRFCHEM_CHEMI_DIR + WRFCHEM_CHEM_EMISS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss + export WRFCHEM_CHEM_EMISS_DIR + WRFCHEM_INITIAL_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061000/wrfchem_initial + export WRFCHEM_INITIAL_DIR + WRFCHEM_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_cycle_cr + export WRFCHEM_CYCLE_CR_DIR + WRFCHEM_CYCLE_MR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_cycle_mr + export WRFCHEM_CYCLE_MR_DIR + WRFCHEM_LAST_CYCLE_CR_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061004/wrfchem_cycle_cr + export WRFCHEM_LAST_CYCLE_CR_DIR + PREPBUFR_MET_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/prepbufr_met_obs + export PREPBUFR_MET_OBS_DIR + AIRNOW_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/airnow_o3_obs + export AIRNOW_O3_OBS_DIR + TOLNET_O3_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/tolnet_o3_obs + export TOLNET_O3_OBS_DIR + COMBINE_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/combine_obs + export COMBINE_OBS_DIR + PREPROCESS_OBS_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/preprocess_obs + export PREPROCESS_OBS_DIR + WRFCHEM_CHEM_ICBC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export WRFCHEM_CHEM_ICBC_DIR + DART_FILTER_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/dart_filter + export DART_FILTER_DIR + UPDATE_BC_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/update_bc + export UPDATE_BC_DIR + BAND_DEPTH_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/band_depth + export BAND_DEPTH_DIR + ENSEMBLE_MEAN_INPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/ensemble_mean_input + export ENSEMBLE_MEAN_INPUT_DIR + ENSEMBLE_MEAN_OUTPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/ensemble_mean_output + export ENSEMBLE_MEAN_OUTPUT_DIR + REAL_TIME_DIR=/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_REAL_TIME + export REAL_TIME_DIR + NL_MIN_LAT=10. + export NL_MIN_LAT + NL_MAX_LAT=80. + export NL_MAX_LAT + NL_MIN_LON=250. + export NL_MIN_LON + NL_MAX_LON=310. + export NL_MAX_LON + NNL_MIN_LAT=10. + export NNL_MIN_LAT + NNL_MAX_LAT=80. + export NNL_MAX_LAT + NNL_MIN_LON=250. + export NNL_MIN_LON + [[ 250. -gt 180 ]] + (( NNL_MIN_LON=250.-360 )) + NNL_MAX_LON=310. + export NNL_MAX_LON + [[ 310. -gt 180 ]] + (( NNL_MAX_LON=310.-360 )) + NL_OBS_PRESSURE_TOP=10000. + export NL_OBS_PRESSURE_TOP + SPREAD_FAC=0.30 + export SPREAD_FAC + MOZ_SPREAD=0.30 + export MOZ_SPREAD + NL_MEAN=1.0 + export NL_MEAN + NL_SPREAD=0.30 + export NL_SPREAD + NL_RUN_DAYS=0 + export NL_RUN_DAYS + NL_RUN_HOURS=1 + export NL_RUN_HOURS + NL_RUN_MINUTES=0 + export NL_RUN_MINUTES + NL_RUN_SECONDS=0 + export NL_RUN_SECONDS + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + NL_START_MONTH=06,06,06 + export NL_START_MONTH + NL_START_DAY=10,10,10 + export NL_START_DAY + NL_START_HOUR=05,05,05 + export NL_START_HOUR + NL_START_MINUTE=00,00,00 + export NL_START_MINUTE + NL_START_SECOND=00,00,00 + export NL_START_SECOND + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + NL_END_MONTH=06,06,06 + export NL_END_MONTH + NL_END_DAY=10,10,10 + export NL_END_DAY + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_END_MINUTE=00,00,00 + export NL_END_MINUTE + NL_END_SECOND=00,00,00 + export NL_END_SECOND + NL_INTERVAL_SECONDS=3600 + export NL_INTERVAL_SECONDS + NL_INPUT_FROM_FILE=.true.,.true.,.true. + export NL_INPUT_FROM_FILE + NL_HISTORY_INTERVAL=60,60,60 + export NL_HISTORY_INTERVAL + NL_FRAMES_PER_OUTFILE=1,1,1 + export NL_FRAMES_PER_OUTFILE + NL_RESTART=.false. + export NL_RESTART + NL_RESTART_INTERVAL=1440 + export NL_RESTART_INTERVAL + NL_IO_FORM_HISTORY=2 + export NL_IO_FORM_HISTORY + NL_IO_FORM_RESTART=2 + export NL_IO_FORM_RESTART + NL_FINE_INPUT_STREAM=0,2 + export NL_FINE_INPUT_STREAM + NL_IO_FORM_INPUT=2 + export NL_IO_FORM_INPUT + NL_IO_FORM_BOUNDARY=2 + export NL_IO_FORM_BOUNDARY + NL_AUXINPUT2_INNAME=$'\'wrfinput_d\'' + export NL_AUXINPUT2_INNAME + NL_AUXINPUT5_INNAME=$'\'wrfchemi_d_\'' + export NL_AUXINPUT5_INNAME + NL_AUXINPUT6_INNAME=$'\'wrfbiochemi_d_\'' + export NL_AUXINPUT6_INNAME + NL_AUXINPUT7_INNAME=$'\'wrffirechemi_d_\'' + export NL_AUXINPUT7_INNAME + NL_AUXINPUT2_INTERVAL_M=60480,60480,60480 + export NL_AUXINPUT2_INTERVAL_M + NL_AUXINPUT5_INTERVAL_M=60,60,60 + export NL_AUXINPUT5_INTERVAL_M + NL_AUXINPUT6_INTERVAL_M=60,60,60 + export NL_AUXINPUT6_INTERVAL_M + NL_AUXINPUT7_INTERVAL_M=60,60,60 + export NL_AUXINPUT7_INTERVAL_M + NL_FRAMES_PER_AUXINPUT2=1,1,1 + export NL_FRAMES_PER_AUXINPUT2 + NL_FRAMES_PER_AUXINPUT5=1,1,1 + export NL_FRAMES_PER_AUXINPUT5 + NL_FRAMES_PER_AUXINPUT6=1,1,1 + export NL_FRAMES_PER_AUXINPUT6 + NL_FRAMES_PER_AUXINPUT7=1,1,1 + export NL_FRAMES_PER_AUXINPUT7 + NL_IO_FORM_AUXINPUT2=2 + export NL_IO_FORM_AUXINPUT2 + NL_IO_FORM_AUXINPUT5=2 + export NL_IO_FORM_AUXINPUT5 + NL_IO_FORM_AUXINPUT6=2 + export NL_IO_FORM_AUXINPUT6 + NL_IO_FORM_AUXINPUT7=2 + export NL_IO_FORM_AUXINPUT7 + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + NL_WRITE_INPUT=.true. + export NL_WRITE_INPUT + NL_INPUTOUT_INTERVAL=360 + export NL_INPUTOUT_INTERVAL + NL_INPUT_OUTNAME=$'\'wrfapm_d_\'' + export NL_INPUT_OUTNAME + NL_TIME_STEP=60 + export NL_TIME_STEP + NNL_TIME_STEP=60 + export NNL_TIME_STEP + NL_TIME_STEP_FRACT_NUM=0 + export NL_TIME_STEP_FRACT_NUM + NL_TIME_STEP_FRACT_DEN=1 + export NL_TIME_STEP_FRACT_DEN + NL_MAX_DOM=03 + export NL_MAX_DOM + NL_S_WE=1,1,1 + export NL_S_WE + NL_E_WE=196,256,259 + export NL_E_WE + NL_S_SN=1,1,1 + export NL_S_SN + NL_E_SN=168,229,205 + export NL_E_SN + NL_S_VERT=1,1,1 + export NL_S_VERT + NL_E_VERT=37,37,37 + export NL_E_VERT + NL_NUM_METGRID_LEVELS=27 + export NL_NUM_METGRID_LEVELS + NL_NUM_METGRID_SOIL_LEVELS=4 + export NL_NUM_METGRID_SOIL_LEVELS + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_PARENT_TIME_STEP_RATIO=1,3,3 + export NL_PARENT_TIME_STEP_RATIO + NL_FEEDBACK=0 + export NL_FEEDBACK + NL_SMOOTH_OPTION=1 + export NL_SMOOTH_OPTION + NL_LAGRANGE_ORDER=2 + export NL_LAGRANGE_ORDER + NL_INTERP_TYPE=2 + export NL_INTERP_TYPE + NL_EXTRAP_TYPE=2 + export NL_EXTRAP_TYPE + NL_T_EXTRAP_TYPE=2 + export NL_T_EXTRAP_TYPE + NL_USE_SURFACE=.true. + export NL_USE_SURFACE + NL_USE_LEVELS_BELOW_GROUND=.true. + export NL_USE_LEVELS_BELOW_GROUND + NL_LOWEST_LEV_FROM_SFC=.false. + export NL_LOWEST_LEV_FROM_SFC + NL_FORCE_SFC_IN_VINTERP=1 + export NL_FORCE_SFC_IN_VINTERP + NL_ZAP_CLOSE_LEVELS=500 + export NL_ZAP_CLOSE_LEVELS + NL_INTERP_THETA=.false. + export NL_INTERP_THETA + NL_HYPSOMETRIC_OPT=2 + export NL_HYPSOMETRIC_OPT + NL_P_TOP_REQUESTED=1000. + export NL_P_TOP_REQUESTED + NL_ETA_LEVELS=1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000, + export NL_ETA_LEVELS + NL_MP_PHYSICS=8,8,8 + export NL_MP_PHYSICS + NL_RA_LW_PHYSICS=4,4,4 + export NL_RA_LW_PHYSICS + NL_RA_SW_PHYSICS=4,4,4 + export NL_RA_SW_PHYSICS + NL_RADT=15,3,1 + export NL_RADT + NL_O3INPUT=2, + export NL_O3INPUT + NL_SF_SFCLAY_PHYSICS=1,1,1 + export NL_SF_SFCLAY_PHYSICS + NL_SF_SURFACE_PHYSICS=2,2,2 + export NL_SF_SURFACE_PHYSICS + NL_BL_PBL_PHYSICS=1,1,1 + export NL_BL_PBL_PHYSICS + NL_BLDT=0,0,0 + export NL_BLDT + NL_CU_PHYSICS=1,1,1 + export NL_CU_PHYSICS + NL_CUDT=0,0,0 + export NL_CUDT + NL_CUGD_AVEDX=1 + export NL_CUGD_AVEDX + NL_CU_RAD_FEEDBACK=.true.,.true.,.true. + export NL_CU_RAD_FEEDBACK + NL_CU_DIAG=0,0,0 + export NL_CU_DIAG + NL_ISFFLX=1 + export NL_ISFFLX + NL_IFSNOW=0 + export NL_IFSNOW + NL_ICLOUD=1 + export NL_ICLOUD + NL_SURFACE_INPUT_SOURCE=1 + export NL_SURFACE_INPUT_SOURCE + NL_NUM_SOIL_LAYERS=4 + export NL_NUM_SOIL_LAYERS + NL_MP_ZERO_OUT=2 + export NL_MP_ZERO_OUT + NL_NUM_LAND_CAT=24 + export NL_NUM_LAND_CAT + NL_SF_URBAN_PHYSICS=1,1,1 + export NL_SF_URBAN_PHYSICS + NL_MAXIENS=1 + export NL_MAXIENS + NL_MAXENS=3 + export NL_MAXENS + NL_MAXENS2=3 + export NL_MAXENS2 + NL_MAXENS3=16 + export NL_MAXENS3 + NL_ENSDIM=144 + export NL_ENSDIM + NL_ISO_TEMP=200. + export NL_ISO_TEMP + NL_TRACER_OPT=0,0,0 + export NL_TRACER_OPT + NL_W_DAMPING=1 + export NL_W_DAMPING + NL_DIFF_OPT=2 + export NL_DIFF_OPT + NL_DIFF_6TH_OPT=0,0,0 + export NL_DIFF_6TH_OPT + NL_DIFF_6TH_FACTOR=0.12,0.12,0.12 + export NL_DIFF_6TH_FACTOR + NL_KM_OPT=4 + export NL_KM_OPT + NL_DAMP_OPT=1 + export NL_DAMP_OPT + NL_ZDAMP=5000,5000,5000 + export NL_ZDAMP + NL_DAMPCOEF=0.15,0.15,0.15 + export NL_DAMPCOEF + NL_NON_HYDROSTATIC=.true.,.true.,.true. + export NL_NON_HYDROSTATIC + NL_USE_BASEPARAM_FR_NML=.true. + export NL_USE_BASEPARAM_FR_NML + NL_MOIST_ADV_OPT=2,2,2 + export NL_MOIST_ADV_OPT + NL_SCALAR_ADV_OPT=2,2,2 + export NL_SCALAR_ADV_OPT + NL_CHEM_ADV_OPT=2,2,2 + export NL_CHEM_ADV_OPT + NL_TKE_ADV_OPT=2,2,2 + export NL_TKE_ADV_OPT + NL_H_MOM_ADV_ORDER=5,5,5 + export NL_H_MOM_ADV_ORDER + NL_V_MOM_ADV_ORDER=3,3,3 + export NL_V_MOM_ADV_ORDER + NL_H_SCA_ADV_ORDER=5,5,5 + export NL_H_SCA_ADV_ORDER + NL_V_SCA_ADV_ORDER=3,3,3 + export NL_V_SCA_ADV_ORDER + NL_SPEC_BDY_WIDTH=5 + export NL_SPEC_BDY_WIDTH + NL_SPEC_ZONE=1 + export NL_SPEC_ZONE + NL_RELAX_ZONE=4 + export NL_RELAX_ZONE + NL_SPECIFIED=.true.,.false.,.false. + export NL_SPECIFIED + NL_NESTED=.false.,.true.,.true. + export NL_NESTED + NL_NIO_TASKS_PER_GROUP=0 + export NL_NIO_TASKS_PER_GROUP + NL_NIO_GROUPS=1 + export NL_NIO_GROUPS + NL_KEMIT=19 + export NL_KEMIT + NL_CHEM_OPT=112,112,112 + export NL_CHEM_OPT + NL_BIOEMDT=1,1,1 + export NL_BIOEMDT + NL_PHOTDT=30,30,30 + export NL_PHOTDT + NL_CHEMDT=1,1,1 + export NL_CHEMDT + NL_IO_STYLE_EMISSIONS=2 + export NL_IO_STYLE_EMISSIONS + NL_EMISS_INPT_OPT=111,111,111 + export NL_EMISS_INPT_OPT + NL_EMISS_OPT=3,3,3 + export NL_EMISS_OPT + NL_EMISS_OPT_VOL=0,0,0 + export NL_EMISS_OPT_VOL + NL_CHEM_IN_OPT=0,0,0 + export NL_CHEM_IN_OPT + NL_PHOT_OPT=3,3,3 + export NL_PHOT_OPT + NL_GAS_DRYDEP_OPT=1,1,1 + export NL_GAS_DRYDEP_OPT + NL_AER_DRYDEP_OPT=1,1,1 + export NL_AER_DRYDEP_OPT + NL_BIO_EMISS_OPT=3,3,3 + export NL_BIO_EMISS_OPT + NL_NE_AREA=118 + export NL_NE_AREA + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_GAS_IC_OPT=112,112,112 + export NL_GAS_IC_OPT + NL_GAS_BC_OPT=112,112,112 + export NL_GAS_BC_OPT + NL_AER_BC_OPT=112,112,112 + export NL_AER_BC_OPT + NL_AER_IC_OPT=112,112,112 + export NL_AER_IC_OPT + NL_GASCHEM_ONOFF=1,1,1 + export NL_GASCHEM_ONOFF + NL_AERCHEM_ONOFF=1,1,1 + export NL_AERCHEM_ONOFF + NL_WETSCAV_ONOFF=1,1,1 + export NL_WETSCAV_ONOFF + NL_CLDCHEM_ONOFF=0,0,0 + export NL_CLDCHEM_ONOFF + NL_VERTMIX_ONOFF=1,1,1 + export NL_VERTMIX_ONOFF + NL_CHEM_CONV_TR=0,0,0 + export NL_CHEM_CONV_TR + NL_CONV_TR_WETSCAV=1,1,1 + export NL_CONV_TR_WETSCAV + NL_CONV_TR_AQCHEM=0,0,0 + export NL_CONV_TR_AQCHEM + NL_SEAS_OPT=0 + export NL_SEAS_OPT + NL_DUST_OPT=1 + export NL_DUST_OPT + NL_DMSEMIS_OPT=1 + export NL_DMSEMIS_OPT + NL_BIOMASS_BURN_OPT=2,2,2 + export NL_BIOMASS_BURN_OPT + NL_PLUMERISEFIRE_FRQ=15,15,15 + export NL_PLUMERISEFIRE_FRQ + NL_SCALE_FIRE_EMISS=.true.,.true.,.true. + export NL_SCALE_FIRE_EMISS + NL_HAVE_BCS_CHEM=.true.,.true.,.true. + export NL_HAVE_BCS_CHEM + NL_AER_RA_FEEDBACK=1,1,1 + export NL_AER_RA_FEEDBACK + NL_CHEMDIAG=0,1,1 + export NL_CHEMDIAG + NL_AER_OP_OPT=1 + export NL_AER_OP_OPT + NL_OPT_PARS_OUT=1 + export NL_OPT_PARS_OUT + NL_HAVE_BCS_UPPER=.false.,.false.,.false. + export NL_HAVE_BCS_UPPER + NL_FIXED_UBC_PRESS=50.,50.,50. + export NL_FIXED_UBC_PRESS + NL_FIXED_UBC_INNAME=$'\'ubvals_b40.20th.track1_1996-2005.nc\'' + export NL_FIXED_UBC_INNAME + NL_PRINT_DETAIL_GRAD=false + export NL_PRINT_DETAIL_GRAD + NL_VAR4D=false + export NL_VAR4D + NL_MULTI_INC=0 + export NL_MULTI_INC + NL_OB_FORMAT=1 + export NL_OB_FORMAT + NL_NUM_FGAT_TIME=1 + export NL_NUM_FGAT_TIME + NL_USE_SYNOPOBS=true + export NL_USE_SYNOPOBS + NL_USE_SHIPOBS=false + export NL_USE_SHIPOBS + NL_USE_METAROBS=true + export NL_USE_METAROBS + NL_USE_SOUNDOBS=true + export NL_USE_SOUNDOBS + NL_USE_MTGIRSOBS=false + export NL_USE_MTGIRSOBS + NL_USE_PILOTOBS=true + export NL_USE_PILOTOBS + NL_USE_AIREOBS=true + export NL_USE_AIREOBS + NL_USE_GEOAMVOBS=false + export NL_USE_GEOAMVOBS + NL_USE_POLARAMVOBS=false + export NL_USE_POLARAMVOBS + NL_USE_BOGUSOBS=false + export NL_USE_BOGUSOBS + NL_USE_BUOYOBS=false + export NL_USE_BUOYOBS + NL_USE_PROFILEROBS=false + export NL_USE_PROFILEROBS + NL_USE_SATEMOBS=false + export NL_USE_SATEMOBS + NL_USE_GPSPWOBS=false + export NL_USE_GPSPWOBS + NL_USE_GPSREFOBS=false + export NL_USE_GPSREFOBS + NL_USE_SSMIRETRIEVALOBS=false + export NL_USE_SSMIRETRIEVALOBS + NL_USE_QSCATOBS=false + export NL_USE_QSCATOBS + NL_USE_AIRSRETOBS=false + export NL_USE_AIRSRETOBS + NL_CHECK_MAX_IV=true + export NL_CHECK_MAX_IV + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + NL_NTMAX=100 + export NL_NTMAX + NL_JE_FACTOR=1.0 + export NL_JE_FACTOR + NL_CV_OPTIONS=3 + export NL_CV_OPTIONS + NL_AS1=0.25,2.0,1.0 + export NL_AS1 + NL_AS2=0.25,2.0,1.0 + export NL_AS2 + NL_AS3=0.25,2.0,1.0 + export NL_AS3 + NL_AS4=0.25,2.0,1.0 + export NL_AS4 + NL_AS5=0.25,2.0,1.0 + export NL_AS5 + NL_CV_OPTIONS_HUM=1 + export NL_CV_OPTIONS_HUM + NL_CHECK_RH=2 + export NL_CHECK_RH + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + NL_CALCULATE_CG_COST_FN=true + export NL_CALCULATE_CG_COST_FN + NL_LAT_STATS_OPTION=false + export NL_LAT_STATS_OPTION + NL_NUM_PSEUDO=0 + export NL_NUM_PSEUDO + NL_PSEUDO_X=0 + export NL_PSEUDO_X + NL_PSEUDO_Y=0 + export NL_PSEUDO_Y + NL_PSEUDO_Z=0 + export NL_PSEUDO_Z + NL_PSEUDO_ERR=0.0 + export NL_PSEUDO_ERR + NL_PSEUDO_VAL=0.0 + export NL_PSEUDO_VAL + NL_ALPHACV_METHOD=2 + export NL_ALPHACV_METHOD + NL_ENSDIM_ALPHA=0 + export NL_ENSDIM_ALPHA + NL_ALPHA_CORR_TYPE=3 + export NL_ALPHA_CORR_TYPE + NL_ALPHA_CORR_SCALE=1500 + export NL_ALPHA_CORR_SCALE + NL_ALPHA_STD_DEV=1.0 + export NL_ALPHA_STD_DEV + NL_ALPHA_VERTLOC=false + export NL_ALPHA_VERTLOC + NL_ALPHA_TRUNCATION=1 + export NL_ALPHA_TRUNCATION + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_PSEUDO_VAR=$'\'t\'' + export NL_PSEUDO_VAR + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_JCDFI_USE=false + export NL_JCDFI_USE + NL_JCDFI_IO=false + export NL_JCDFI_IO + NL_OUTLIER_THRESHOLD=3. + export NL_OUTLIER_THRESHOLD + NL_ENABLE_SPECIAL_OUTLIER_CODE=.false. + export NL_ENABLE_SPECIAL_OUTLIER_CODE + NL_SPECIAL_OUTLIER_THRESHOLD=3. + export NL_SPECIAL_OUTLIER_THRESHOLD + NL_ENS_SIZE=10 + export NL_ENS_SIZE + NL_OUTPUT_RESTART=.true. + export NL_OUTPUT_RESTART + NL_START_FROM_RESTART=.true. + export NL_START_FROM_RESTART + NL_OBS_SEQUENCE_IN_NAME=$'\'obs_seq.out\'' + export NL_OBS_SEQUENCE_IN_NAME + NL_OBS_SEQUENCE_OUT_NAME=$'\'obs_seq.final\'' + export NL_OBS_SEQUENCE_OUT_NAME + NL_RESTART_IN_FILE_NAME=$'\'filter_ic_old\'' + export NL_RESTART_IN_FILE_NAME + NL_RESTART_OUT_FILE_NAME=$'\'filter_ic_new\'' + export NL_RESTART_OUT_FILE_NAME + echo 201506100430 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 16200 + (( temp[1]=16200+1 )) + NL_FIRST_OBS_DAYS=151370 + export NL_FIRST_OBS_DAYS + NL_FIRST_OBS_SECONDS=16201 + export NL_FIRST_OBS_SECONDS + echo 201506100530 0 -g + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/advance_time + set -A temp 151370 19800 + NL_LAST_OBS_DAYS=151370 + export NL_LAST_OBS_DAYS + NL_LAST_OBS_SECONDS=19800 + export NL_LAST_OBS_SECONDS + NL_NUM_OUTPUT_STATE_MEMBERS=0 + export NL_NUM_OUTPUT_STATE_MEMBERS + NL_NUM_OUTPUT_OBS_MEMBERS=10 + export NL_NUM_OUTPUT_OBS_MEMBERS + true + NL_INF_FLAVOR_PRIOR=2 + export NL_INF_FLAVOR_PRIOR + NL_INF_FLAVOR_POST=0 + export NL_INF_FLAVOR_POST + [[ 2015061005 -eq 2015061001 ]] + NL_INF_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_INITIAL_FROM_RESTART_PRIOR + NL_INF_SD_INITIAL_FROM_RESTART_PRIOR=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_PRIOR + NL_INF_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_INITIAL_FROM_RESTART_POST + NL_INF_SD_INITIAL_FROM_RESTART_POST=.true. + export NL_INF_SD_INITIAL_FROM_RESTART_POST + NL_INF_IN_FILE_NAME_PRIOR=$'\'prior_inflate_ic_old\'' + export NL_INF_IN_FILE_NAME_PRIOR + NL_INF_IN_FILE_NAME_POST=$'\'post_inflate_ics\'' + export NL_INF_IN_FILE_NAME_POST + NL_INF_OUT_FILE_NAME_PRIOR=$'\'prior_inflate_ic_new\'' + export NL_INF_OUT_FILE_NAME_PRIOR + NL_INF_OUT_FILE_NAME_POST=$'\'prior_inflate_restart\'' + export NL_INF_OUT_FILE_NAME_POST + NL_INF_DIAG_FILE_NAME_PRIOR=$'\'prior_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_PRIOR + NL_INF_DIAG_FILE_NAME_POST=$'\'post_inflate_diag\'' + export NL_INF_DIAG_FILE_NAME_POST + NL_INF_INITIAL_PRIOR=1.0 + export NL_INF_INITIAL_PRIOR + NL_INF_INITIAL_POST=1.0 + export NL_INF_INITIAL_POST + NL_INF_SD_INITIAL_PRIOR=0.6 + export NL_INF_SD_INITIAL_PRIOR + NL_INF_SD_INITIAL_POST=0.0 + export NL_INF_SD_INITIAL_POST + NL_INF_DAMPING_PRIOR=0.9 + export NL_INF_DAMPING_PRIOR + NL_INF_DAMPING_POST=1.0 + export NL_INF_DAMPING_POST + NL_INF_LOWER_BOUND_PRIOR=1.0 + export NL_INF_LOWER_BOUND_PRIOR + NL_INF_LOWER_BOUND_POST=1.0 + export NL_INF_LOWER_BOUND_POST + NL_INF_UPPER_BOUND_PRIOR=100.0 + export NL_INF_UPPER_BOUND_PRIOR + NL_INF_UPPER_BOUND_POST=100.0 + export NL_INF_UPPER_BOUND_POST + NL_INF_SD_LOWER_BOUND_PRIOR=0.6 + export NL_INF_SD_LOWER_BOUND_PRIOR + NL_INF_SD_LOWER_BOUND_POST=0.0 + export NL_INF_SD_LOWER_BOUND_POST + NL_CUTOFF=0.1 + export NL_CUTOFF + NL_SPECIAL_LOCALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_LOCALIZATION_OBS_TYPES + NL_SAMPLING_ERROR_CORRECTION=.true. + export NL_SAMPLING_ERROR_CORRECTION + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.05,0.05 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_SPECIAL_LOCALIZATION_CUTOFFS=0.1,0.1 + export NL_SPECIAL_LOCALIZATION_CUTOFFS + NL_ADAPTIVE_LOCALIZATION_THRESHOLD=2000 + export NL_ADAPTIVE_LOCALIZATION_THRESHOLD + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_WRITE_BINARY_RESTART_FILE=.true. + export NL_WRITE_BINARY_RESTART_FILE + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_USE_VARLOC=.true. + export NL_USE_VARLOC + NL_USE_INDEP_CHEM_ASSIM=.false. + export NL_USE_INDEP_CHEM_ASSIM + NL_DEFAULT_STATE_VARIABLES=.false. + export NL_DEFAULT_STATE_VARIABLES + NL_CONV_STATE_VARIABLES=$'\'U\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U\', \'UPDATE\',\'999\',\n \'V\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V\', \'UPDATE\',\'999\',\n \'W\', \'KIND_VERTICAL_VELOCITY\', \'TYPE_W\', \'UPDATE\',\'999\',\n \'PH\', \'KIND_GEOPOTENTIAL_HEIGHT\', \'TYPE_GZ\', \'UPDATE\',\'999\',\n \'T\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_T\', \'UPDATE\',\'999\',\n \'MU\', \'KIND_PRESSURE\', \'TYPE_MU\', \'UPDATE\',\'999\',\n \'QVAPOR\',\'KIND_VAPOR_MIXING_RATIO\', \'TYPE_QV\', \'UPDATE\',\'999\',\n \'QRAIN\', \'KIND_RAINWATER_MIXING_RATIO\',\'TYPE_QRAIN\', \'UPDATE\',\'999\',\n \'QCLOUD\',\'KIND_CLOUD_LIQUID_WATER\', \'TYPE_QCLOUD\', \'UPDATE\',\'999\',\n \'QSNOW\', \'KIND_SNOW_MIXING_RATIO\', \'TYPE_QSNOW\', \'UPDATE\',\'999\',\n \'QICE\', \'KIND_CLOUD_ICE\', \'TYPE_QICE\', \'UPDATE\',\'999\',\n \'U10\', \'KIND_U_WIND_COMPONENT\', \'TYPE_U10\',\'UPDATE\',\'999\',\n \'V10\', \'KIND_V_WIND_COMPONENT\', \'TYPE_V10\',\'UPDATE\',\'999\',\n \'T2\', \'KIND_TEMPERATURE\', \'TYPE_T2\', \'UPDATE\',\'999\',\n \'TH2\', \'KIND_POTENTIAL_TEMPERATURE\',\'TYPE_TH2\',\'UPDATE\',\'999\',\n \'Q2\', \'KIND_SPECIFIC_HUMIDITY\', \'TYPE_Q2\', \'UPDATE\',\'999\',\n \'PSFC\', \'KIND_PRESSURE\', \'TYPE_PS\', \'UPDATE\',\'999\',\n \'o3\', \'KIND_O3\', \'TYPE_O3\', \'UPDATE\',\'999\',\n \'co\', \'KIND_CO\', \'TYPE_CO\', \'UPDATE\',\'999\',\n \'no\', \'KIND_NO\', \'TYPE_NO\', \'UPDATE\',\'999\',\n \'no2\', \'KIND_NO2\', \'TYPE_NO2\', \'UPDATE\',\'999\',\n \'hno3\', \'KIND_HNO3\', \'TYPE_HNO3\', \'UPDATE\',\'999\',\n \'hno4\', \'KIND_HNO4\', \'TYPE_HNO4\', \'UPDATE\',\'999\',\n \'n2o5\', \'KIND_N2O5\', \'TYPE_N2O5\', \'UPDATE\',\'999\',\n \'c2h6\', \'KIND_C2H6\', \'TYPE_C2H6\', \'UPDATE\',\'999\',\n \'acet\', \'KIND_ACET\', \'TYPE_ACET\', \'UPDATE\',\'999\',\n \'hcho\', \'KIND_HCHO\', \'TYPE_HCHO\', \'UPDATE\',\'999\',\n \'c2h4\', \'KIND_C2H4\', \'TYPE_C2H4\', \'UPDATE\',\'999\',\n \'c3h6\', \'KIND_C3H6\', \'TYPE_C3H6\', \'UPDATE\',\'999\',\n \'tol\', \'KIND_TOL\', \'TYPE_TOL\', \'UPDATE\',\'999\',\n \'mvk\', \'KIND_MVK\', \'TYPE_MVK\', \'UPDATE\',\'999\',\n \'bigalk\',\'KIND_BIGALK\', \'TYPE_BIGALK\', \'UPDATE\',\'999\',\n \'isopr\', \'KIND_ISOPR\', \'TYPE_ISOPR\', \'UPDATE\',\'999\',\n \'macr\', \'KIND_MACR\', \'TYPE_MACR\', \'UPDATE\',\'999\',\n \'c3h8\', \'KIND_C3H8\', \'TYPE_C3H8\', \'UPDATE\',\'999\',\n \'c10h16\',\'KIND_C10H16\', \'TYPE_C10H16\', \'UPDATE\',\'999\',\n \'DUST_1\',\'KIND_DST01\', \'TYPE_DST01\',\'UPDATE\',\'999\',\n \'DUST_2\',\'KIND_DST02\', \'TYPE_DST02\',\'UPDATE\',\'999\',\n \'DUST_3\',\'KIND_DST03\', \'TYPE_DST03\',\'UPDATE\',\'999\',\n \'DUST_4\',\'KIND_DST04\', \'TYPE_DST04\',\'UPDATE\',\'999\',\n \'DUST_5\',\'KIND_DST05\', \'TYPE_DST05\',\'UPDATE\',\'999\',\n \'BC1\',\'KIND_CB1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'BC2\',\'KIND_CB2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC1\',\'KIND_OC1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'OC2\',\'KIND_OC2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'sulf\',\'KIND_SO4\', \'TYPE_SO4\' ,\'UPDATE\',\'999\',\n \'TAUAER1\',\'KIND_TAUAER1\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER2\',\'KIND_TAUAER2\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER3\',\'KIND_TAUAER3\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'TAUAER4\',\'KIND_TAUAER4\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'PM2_5_DRY\',\'KIND_PM25\' , \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P10\',\'KIND_PM10\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'P25\',\'KIND_PM25\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_1\',\'KIND_SSLT01\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_2\',\'KIND_SSLT02\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_3\',\'KIND_SSLT03\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\',\n \'SEAS_4\',\'KIND_SSLT04\', \'TYPE_EXTCOF\',\'UPDATE\',\'999\'' + export NL_CONV_STATE_VARIABLES + NL_EMISS_CHEMI_VARIABLES=$'\'E_CO\', \'KIND_E_CO\', \'TYPE_E_CO\', \'UPDATE\',\'999\',\n \'E_NO\' ,\'KIND_E_NO\', \'TYPE_E_NO\', \'UPDATE\',\'999\'' + export NL_EMISS_CHEMI_VARIABLES + NL_EMISS_FIRECHEMI_VARIABLES=$'\'ebu_in_co\' ,\'KIND_EBU_CO\', \'TYPE_EBU_CO\', \'UPDATE\',\'999\',\n \'ebu_in_no\' ,\'KIND_EBU_NO\', \'TYPE_EBU_NO\', \'UPDATE\',\'999\',\n \'ebu_in_oc\' ,\'KIND_EBU_OC\', \'TYPE_EBU_OC\', \'UPDATE\',\'999\',\n \'ebu_in_bc\' ,\'KIND_EBU_BC\', \'TYPE_EBU_BC\', \'UPDATE\',\'999\',\n \'ebu_in_c2h4\' ,\'KIND_EBU_c2h4\', \'TYPE_EBU_c2h4\', \'UPDATE\',\'999\',\n \'ebu_in_ch2o\' ,\'KIND_EBU_ch2o\', \'TYPE_EBU_ch2o\', \'UPDATE\',\'999\',\n \'ebu_in_ch3oh\' ,\'KIND_EBU_ch3oh\', \'TYPE_EBU_ch3oh\',\'UPDATE\',\'999\'' + export NL_EMISS_FIRECHEMI_VARIABLES + NL_WRF_STATE_BOUNDS=$'\'QVAPOR\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QRAIN\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QCLOUD\',\'0.0\',\'NULL\',\'CLAMP\',\n \'QSNOW\', \'0.0\',\'NULL\',\'CLAMP\',\n \'QICE\', \'0.0\',\'NULL\',\'CLAMP\',\n \'o3\', \'0.\',\'NULL\',\'CLAMP\',\n \'co\', \'1.e-4\',\'NULL\',\'CLAMP\',\n \'no\', \'0.0\',\'NULL\',\'CLAMP\',\n \'no2\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno3\', \'0.0\',\'NULL\',\'CLAMP\',\n \'hno4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'n2o5\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'acet\' \'0.0\',\'NULL\',\'CLAMP\',\n \'hcho\' \'0.0\',\'NULL\',\'CLAMP\',\n \'c2h4\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h6\', \'0.0\',\'NULL\',\'CLAMP\',\n \'tol\', \'0.0\',\'NULL\',\'CLAMP\',\n \'mvk\', \'0.0\',\'NULL\',\'CLAMP\',\n \'bigalk\',\'0.0\',\'NULL\',\'CLAMP\',\n \'isopr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'macr\', \'0.0\',\'NULL\',\'CLAMP\',\n \'c3h8\' ,\'0.0\',\'NULL\',\'CLAMP\', \n \'c10h16\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'DUST_5\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'BC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'OC2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'sulf\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'TAUAER4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'PM2_5_DRY\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P10\',\'0.0\',\'NULL\',\'CLAMP\',\n \'P25\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_1\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_2\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_3\',\'0.0\',\'NULL\',\'CLAMP\',\n \'SEAS_4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_CO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'E_NO\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_co\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_no\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_oc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_bc\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_c2h4\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch2o\',\'0.0\',\'NULL\',\'CLAMP\',\n \'ebu_in_ch3oh\',\'0.0\',\'NULL\',\'CLAMP\'' + export NL_WRF_STATE_BOUNDS + NL_OUTPUT_STATE_VECTOR=.false. + export NL_OUTPUT_STATE_VECTOR + NL_NUM_DOMAINS=02 + export NL_NUM_DOMAINS + NL_CALENDAR_TYPE=3 + export NL_CALENDAR_TYPE + NL_ASSIMILATION_PERIOD_SECONDS=3600 + export NL_ASSIMILATION_PERIOD_SECONDS + NL_VERT_LOCALIZATION_COORD=4 + export NL_VERT_LOCALIZATION_COORD + NL_CENTER_SEARCH_HALF_LENGTH=500000. + export NL_CENTER_SEARCH_HALF_LENGTH + NL_CENTER_SPLINE_GRID_SCALE=10 + export NL_CENTER_SPLINE_GRID_SCALE + NL_SFC_ELEV_MAX_DIFF=100.0 + export NL_SFC_ELEV_MAX_DIFF + NL_CIRCULATION_PRES_LEVEL=80000.0 + export NL_CIRCULATION_PRES_LEVEL + NL_CIRCULATION_RADIUS=108000.0 + export NL_CIRCULATION_RADIUS + NL_ALLOW_OBS_BELOW_VOL=.false. + export NL_ALLOW_OBS_BELOW_VOL + NL_FIRST_BIN_CENTER_YY=2015 + export NL_FIRST_BIN_CENTER_YY + NL_FIRST_BIN_CENTER_MM=6 + export NL_FIRST_BIN_CENTER_MM + NL_FIRST_BIN_CENTER_DD=10 + export NL_FIRST_BIN_CENTER_DD + NL_FIRST_BIN_CENTER_HH=5 + export NL_FIRST_BIN_CENTER_HH + NL_LAST_BIN_CENTER_YY=2015 + export NL_LAST_BIN_CENTER_YY + NL_LAST_BIN_CENTER_MM=6 + export NL_LAST_BIN_CENTER_MM + NL_LAST_BIN_CENTER_DD=10 + export NL_LAST_BIN_CENTER_DD + NL_LAST_BIN_CENTER_HH=5 + export NL_LAST_BIN_CENTER_HH + NL_BIN_SEPERATION_YY=0 + export NL_BIN_SEPERATION_YY + NL_BIN_SEPERATION_MM=0 + export NL_BIN_SEPERATION_MM + NL_BIN_SEPERATION_DD=0 + export NL_BIN_SEPERATION_DD + NL_BIN_SEPERATION_HH=0 + export NL_BIN_SEPERATION_HH + NL_BIN_WIDTH_YY=0 + export NL_BIN_WIDTH_YY + NL_BIN_WIDTH_MM=0 + export NL_BIN_WIDTH_MM + NL_BIN_WIDTH_DD=0 + export NL_BIN_WIDTH_DD + NL_BIN_WIDTH_HH=0 + export NL_BIN_WIDTH_HH + NL_SINGLE_RESTART_FILE_IN=.false. + export NL_SINGLE_RESTART_FILE_IN + NL_SINGLE_RESTART_FILE_OUT=.false. + export NL_SINGLE_RESTART_FILE_OUT + NL_MODEL_ADVANCE_FILE=.false. + export NL_MODEL_ADVANCE_FILE + NL_ADV_MOD_COMMAND=$'\'mpirun -np 64 ./wrf.exe\'' + export NL_ADV_MOD_COMMAND + NL_DART_RESTART_NAME=$'\'dart_wrf_vector\'' + export NL_DART_RESTART_NAME + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_ADD_EMISS=.false. + export NL_ADD_EMISS + NL_INPUT_FILE_NAME=$'\'assim_model_state_tp\'' + export NL_INPUT_FILE_NAME + NL_OUTPUT_FILE_NAME=$'\'assim_model_state_ic\'' + export NL_OUTPUT_FILE_NAME + NL_OUTPUT_IS_MODEL_ADVANCE_FILE=.true. + export NL_OUTPUT_IS_MODEL_ADVANCE_FILE + NL_OVERWRITE_ADVANCE_TIME=.true. + export NL_OVERWRITE_ADVANCE_TIME + NL_NEW_ADVANCE_DAYS=151370 + export NL_NEW_ADVANCE_DAYS + NL_NEW_ADVANCE_SECS=21600 + export NL_NEW_ADVANCE_SECS + NL_INPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90\'' + export NL_INPUT_OBS_KIND_MOD_FILE + NL_OUTPUT_OBS_KIND_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90\'' + export NL_OUTPUT_OBS_KIND_MOD_FILE + NL_INPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90\'' + export NL_INPUT_OBS_DEF_MOD_FILE + NL_OUTPUT_OBS_DEF_MOD_FILE=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90\'' + export NL_OUTPUT_OBS_DEF_MOD_FILE + NL_INPUT_FILES=$'\'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90\',\n \'/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90\'' + export NL_INPUT_FILES + NL_ASSIMILATE_THESE_OBS_TYPES=$'\'AIRNOW_O3\', \n \'TOLNET_O3\',\n \'MOPITT_CO_RETRIEVAL\',\n \'IASI_CO_RETRIEVAL\',\n \'IASI_O3_RETRIEVAL\',\n \'MODIS_AOD_RETRIEVAL\',\n \'OMI_NO2_COLUMN\'' + export NL_ASSIMILATE_THESE_OBS_TYPES + NL_EVALUATE_THESE_OBS_TYPES=' ' + export NL_EVALUATE_THESE_OBS_TYPES + NL_FIELDNAMES=$'\'SNOWC\',\n \'ALBBCK\',\n \'TMN\',\n \'TSK\',\n \'SH2O\',\n \'SMOIS\',\n \'SEAICE\',\n \'HGT_d01\',\n \'TSLB\',\n \'SST\',\n \'SNOWH\',\n \'SNOW\'' + export NL_FIELDNAMES + NL_FIELDLIST_FILE=$'\' \'' + export NL_FIELDLIST_FILE + NL_HORIZ_DIST_ONLY=.false. + export NL_HORIZ_DIST_ONLY + NL_VERT_NORMALIZATION_PRESSURE=100000.0 + export NL_VERT_NORMALIZATION_PRESSURE + NL_VERT_NORMALIZATION_HEIGHT=10000.0 + export NL_VERT_NORMALIZATION_HEIGHT + NL_VERT_NORMALIZATION_LEVELS=20.0 + export NL_VERT_NORMALIZATION_LEVELS + NL_VERT_NORMALIZATION_SCALE_HEIGHT=1.5 + export NL_VERT_NORMALIZATION_SCALE_HEIGHT + NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES=$'\'IASI_CO_RETRIEVAL\',\'MOPITT_CO_RETRIEVAL\'' + export NL_SPECIAL_VERT_NORMALIZATION_OBS_TYPES + NL_SPECIAL_VERT_NORMALIZATION_PRESSURES=100000.0,100000.0 + export NL_SPECIAL_VERT_NORMALIZATION_PRESSURES + NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS=10000.0,10000.0 + export NL_SPECIAL_VERT_NORMALIZATION_HEIGHTS + NL_SPECIAL_VERT_NORMALIZATION_LEVELS=20.0,20.0 + export NL_SPECIAL_VERT_NORMALIZATION_LEVELS + NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS=1.5,1.5 + export NL_SPECIAL_VERT_NORMALIZATION_SCALE_HEIGHTS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m + 2> /dev/null + ASIM_DATE_MIN=201506100430 + export ASIM_DATE_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m + 2> /dev/null + ASIM_DATE_MAX=201506100530 + export ASIM_DATE_MAX + cut -c1-4 + echo 201506100430 + ASIM_MN_YYYY=2015 + export ASIM_MN_YYYY + cut -c5-6 + echo 201506100430 + ASIM_MN_MM=06 + export ASIM_MN_MM + cut -c7-8 + echo 201506100430 + ASIM_MN_DD=10 + export ASIM_MN_DD + cut -c9-10 + echo 201506100430 + ASIM_MN_HH=04 + export ASIM_MN_HH + cut -c1-4 + echo 201506100530 + ASIM_MX_YYYY=2015 + export ASIM_MX_YYYY + cut -c5-6 + echo 201506100530 + ASIM_MX_MM=06 + export ASIM_MX_MM + cut -c7-8 + echo 201506100530 + ASIM_MX_DD=10 + export ASIM_MX_DD + cut -c9-10 + echo 201506100530 + ASIM_MX_HH=05 + export ASIM_MX_HH + FIRE_START_DATE=2015-06-10 + export FIRE_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + E_DATE=2015061006 + export E_DATE + cut -c1-4 + echo 2015061006 + E_YYYY=2015 + export E_YYYY + cut -c5-6 + echo 2015061006 + E_MM=06 + export E_MM + cut -c7-8 + echo 2015061006 + E_DD=10 + export E_DD + cut -c9-10 + echo 2015061006 + E_HH=06 + export E_HH + FIRE_END_DATE=2015-06-10 + export FIRE_END_DATE + [[ true == true ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrf3_6_1_m_debug/WRFV3/main/real.exe ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + P_DATE=2015061005 + export P_DATE + (( FCST_PERIOD_TWICE=2*1 )) + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 2 + 2> /dev/null + P_END_DATE=2015061007 + export P_END_DATE + [[ 2015061005 -le 2015061007 ]] + cut -c1-4 + echo 2015061005 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061005 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061005 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061005 + P_HH=05 + export P_HH + P_FILE_DATE=2015-06-10_05:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061007 ]] + cut -c1-4 + echo 2015061006 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061006 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061006 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061006 + P_HH=06 + export P_HH + P_FILE_DATE=2015-06-10_06:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061007 ]] + cut -c1-4 + echo 2015061007 + P_YYYY=2015 + export P_YYYY + cut -c5-6 + echo 2015061007 + P_MM=06 + export P_MM + cut -c7-8 + echo 2015061007 + P_DD=10 + export P_DD + cut -c9-10 + echo 2015061007 + P_HH=07 + export P_HH + P_FILE_DATE=2015-06-10_07:00:00.nc + export P_FILE_DATE + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_07:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_07:00:00.nc ./. + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_07:00:00.nc ./. + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061007 1 + 2> /dev/null + P_DATE=2015061008 + export P_DATE + [[ 2015061008 -le 2015061007 ]] + P_DATE=2015061005 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061005 -le 2015061006 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061005 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061005 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061005 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061005 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061005 + L_START_HOUR=05 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_START_HOUR=05,05,05 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29267 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_20232.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150399 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + NL_IOFIELDS_FILENAME=' ' + export NL_IOFIELDS_FILENAME + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + L_FCST_RANGE=1 + export L_FCST_RANGE + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + L_START_DATE=2015061006 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_END_DATE=2015061007 + export L_END_DATE + cut -c1-4 + echo 2015061006 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061006 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061006 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061006 + L_START_HOUR=06 + export L_START_HOUR + cut -c1-4 + echo 2015061007 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061007 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061007 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061007 + L_END_HOUR=07 + export L_END_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_START_HOUR=06,06,06 + export NL_START_HOUR + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + cut -c1-4 + echo 2015061007 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + cut -c5-6 + echo 2015061007 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + cut -c7-8 + echo 2015061007 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + cut -c9-10 + echo 2015061007 + NL_END_HOUR=07,07,07 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\',\'2015-06-10_07:00:00\'' + export NL_END_DATE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_nested_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 06,06,06, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 07,07,07, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, fine_input_stream = 0,2, io_form_input = 2, io_form_boundary = 2, auxinput2_inname = 'wrfinput_d', auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput2_interval_m = 60480,60480,60480, auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, frames_per_auxinput2 = 1,1,1, frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, io_form_auxinput2 = 2, io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 03, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, mp_zero_out = 2, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + RANDOM=31742 + JOBRND=479_real + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_real normal+ 01:40:00 1 1 real.exe PARALLEL + JOBID=479_real + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=real.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29380 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_real #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_real.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./real.exe > index_30056.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150400 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d01 wrfinput_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d02 wrfinput_d02_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfinput_d03 wrfinput_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + mv wrfbdy_d01 wrfbdy_d01_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + [[ false == true ]] + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + NL_MAX_DOM=1 + export NL_MAX_DOM + NL_OB_FORMAT=1 + export NL_OB_FORMAT + L_FCST_RANGE=1 + export L_FCST_RANGE + L_START_DATE=2015061005 + export L_START_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + cut -c1-4 + echo 2015061005 + L_START_YEAR=2015 + export L_START_YEAR + cut -c5-6 + echo 2015061005 + L_START_MONTH=06 + export L_START_MONTH + cut -c7-8 + echo 2015061005 + L_START_DAY=10 + export L_START_DAY + cut -c9-10 + echo 2015061005 + L_START_HOUR=05 + export L_START_HOUR + cut -c1-4 + echo 2015061006 + L_END_YEAR=2015 + export L_END_YEAR + cut -c5-6 + echo 2015061006 + L_END_MONTH=06 + export L_END_MONTH + cut -c7-8 + echo 2015061006 + L_END_DAY=10 + export L_END_DAY + cut -c9-10 + echo 2015061006 + L_END_HOUR=06 + export L_END_HOUR + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + cut -c1-4 + echo 2015061005 + NL_START_YEAR=2015,2015,2015 + export NL_START_YEAR + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + cut -c5-6 + echo 2015061005 + NL_START_MONTH=06,06,06 + export NL_START_MONTH + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + cut -c7-8 + echo 2015061005 + NL_START_DAY=10,10,10 + export NL_START_DAY + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + cut -c9-10 + echo 2015061005 + NL_START_HOUR=05,05,05 + export NL_START_HOUR + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + cut -c1-4 + echo 2015061006 + NL_END_YEAR=2015,2015,2015 + export NL_END_YEAR + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + cut -c5-6 + echo 2015061006 + NL_END_MONTH=06,06,06 + export NL_END_MONTH + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + cut -c7-8 + echo 2015061006 + NL_END_DAY=10,10,10 + export NL_END_DAY + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + cut -c9-10 + echo 2015061006 + NL_END_HOUR=06,06,06 + export NL_END_HOUR + NL_START_DATE=$'\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\',\'2015-06-10_05:00:00\'' + export NL_START_DATE + NL_END_DATE=$'\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\',\'2015-06-10_06:00:00\'' + export NL_END_DATE + P_DATE=2015061005 + export P_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_END_DATE=2015061006 + export P_END_DATE + [[ 2015061005 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_05:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_04:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + mkdir wrfda_cr_1 + cd wrfda_cr_1 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29519 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21853.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150401 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + mkdir wrfda_mr_1 + cd wrfda_mr_1 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29533 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12178.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150402 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + mkdir wrfda_fr_1 + cd wrfda_fr_1 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29547 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4011.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150403 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + mkdir wrfda_cr_2 + cd wrfda_cr_2 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29575 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_23072.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150404 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + mkdir wrfda_mr_2 + cd wrfda_mr_2 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29588 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19752.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150405 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + mkdir wrfda_fr_2 + cd wrfda_fr_2 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29602 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31498.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150406 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + mkdir wrfda_cr_3 + cd wrfda_cr_3 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29629 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150407 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + mkdir wrfda_mr_3 + cd wrfda_mr_3 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29647 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9095.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150408 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + mkdir wrfda_fr_3 + cd wrfda_fr_3 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29661 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8433.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150409 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + mkdir wrfda_cr_4 + cd wrfda_cr_4 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + echo 2015061005 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29688 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_31989.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150410 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + mkdir wrfda_mr_4 + cd wrfda_mr_4 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29702 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_18462.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150411 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + mkdir wrfda_fr_4 + cd wrfda_fr_4 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29715 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_19378.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150412 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + mkdir wrfda_cr_5 + cd wrfda_cr_5 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29743 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5179.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150413 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + mkdir wrfda_mr_5 + cd wrfda_mr_5 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29756 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6679.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150414 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + mkdir wrfda_fr_5 + cd wrfda_fr_5 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29769 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_6821.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150415 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + mkdir wrfda_cr_6 + cd wrfda_cr_6 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29797 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2187.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150416 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + mkdir wrfda_mr_6 + cd wrfda_mr_6 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29810 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16801.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150417 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + mkdir wrfda_fr_6 + cd wrfda_fr_6 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29824 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2959.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150418 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + mkdir wrfda_cr_7 + cd wrfda_cr_7 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29913 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_8305.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150419 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + mkdir wrfda_mr_7 + cd wrfda_mr_7 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29956 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16727.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150420 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + mkdir wrfda_fr_7 + cd wrfda_fr_7 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=29999 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20572.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150421 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + mkdir wrfda_cr_8 + cd wrfda_cr_8 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30026 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29621.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150422 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + mkdir wrfda_mr_8 + cd wrfda_mr_8 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30040 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_5679.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150423 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + mkdir wrfda_fr_8 + cd wrfda_fr_8 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30054 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28910.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150424 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + mkdir wrfda_cr_9 + cd wrfda_cr_9 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30082 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11499.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150425 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + mkdir wrfda_mr_9 + cd wrfda_mr_9 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30095 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13085.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150426 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + mkdir wrfda_fr_9 + cd wrfda_fr_9 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30109 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_28243.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150427 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + mkdir wrfda_cr_10 + cd wrfda_cr_10 + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30137 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12291.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150428 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + mkdir wrfda_mr_10 + cd wrfda_mr_10 + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30150 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_21972.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150429 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + mkdir wrfda_fr_10 + cd wrfda_fr_10 + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_05:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_05:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_04:30:00', / &wrfvar22 time_window_max = '2015-06-10_05:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_05:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30163 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26948.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150430 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_05:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_05:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + P_DATE=2015061006 + export P_DATE + [[ 2015061006 -le 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_06:00:00 + export ANALYSIS_DATE + NL_ANALYSIS_DATE=$'\'2015-06-10_06:00:00\'' + export NL_ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 -30m -W + 2> /dev/null + NL_TIME_WINDOW_MIN=$'\'2015-06-10_05:30:00\'' + export NL_TIME_WINDOW_MIN + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +30m -W + 2> /dev/null + NL_TIME_WINDOW_MAX=$'\'2015-06-10_06:30:00\'' + export NL_TIME_WINDOW_MAX + NL_ANALYSIS_TYPE=$'\'RANDOMCV\'' + export NL_ANALYSIS_TYPE + NL_PUT_RAND_SEED=true + export NL_PUT_RAND_SEED + TRANDOM=31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_1 + export LCR_DIR + [[ ! -e wrfda_cr_1 ]] + cd wrfda_cr_1 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21853.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 1 '*' 100000 + bc -l + NL_SEED_ARRAY2=100000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30308 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9303.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150431 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_1 + export LMR_DIR + [[ ! -e wrfda_mr_1 ]] + cd wrfda_mr_1 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12178.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30322 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_27220.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150432 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ ! -e wrfda_fr_1 ]] + cd wrfda_fr_1 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_4011.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 100000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30336 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20821.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150433 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_2 + export LCR_DIR + [[ ! -e wrfda_cr_2 ]] + cd wrfda_cr_2 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_23072.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 2 '*' 100000 + bc -l + NL_SEED_ARRAY2=200000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30363 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_10280.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150434 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_2 + export LMR_DIR + [[ ! -e wrfda_mr_2 ]] + cd wrfda_mr_2 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19752.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30377 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_26380.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150435 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ ! -e wrfda_fr_2 ]] + cd wrfda_fr_2 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31498.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 200000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30391 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_29919.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150436 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_3 + export LCR_DIR + [[ ! -e wrfda_cr_3 ]] + cd wrfda_cr_3 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_22583.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 3 '*' 100000 + bc -l + NL_SEED_ARRAY2=300000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30419 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4967.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150437 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_3 + export LMR_DIR + [[ ! -e wrfda_mr_3 ]] + cd wrfda_mr_3 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_9095.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30433 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16025.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150438 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ ! -e wrfda_fr_3 ]] + cd wrfda_fr_3 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8433.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 300000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30446 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_418.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150439 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_4 + export LCR_DIR + [[ ! -e wrfda_cr_4 ]] + cd wrfda_cr_4 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_31989.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 4 '*' 100000 + bc -l + NL_SEED_ARRAY2=400000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30474 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_25707.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150440 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_4 + export LMR_DIR + [[ ! -e wrfda_mr_4 ]] + cd wrfda_mr_4 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_18462.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30489 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_1348.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150441 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ ! -e wrfda_fr_4 ]] + cd wrfda_fr_4 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_19378.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 400000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30502 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2837.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150442 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_5 + export LCR_DIR + [[ ! -e wrfda_cr_5 ]] + cd wrfda_cr_5 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5179.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 5 '*' 100000 + bc -l + NL_SEED_ARRAY2=500000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30530 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13290.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150443 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_5 + export LMR_DIR + [[ ! -e wrfda_mr_5 ]] + cd wrfda_mr_5 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6679.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30544 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_969.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150444 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ ! -e wrfda_fr_5 ]] + cd wrfda_fr_5 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_6821.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 500000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30563 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_20535.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150445 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_6 + export LCR_DIR + [[ ! -e wrfda_cr_6 ]] + cd wrfda_cr_6 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2187.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 6 '*' 100000 + bc -l + NL_SEED_ARRAY2=600000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30591 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_24779.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150446 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_6 + export LMR_DIR + [[ ! -e wrfda_mr_6 ]] + cd wrfda_mr_6 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16801.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30605 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13461.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150447 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ ! -e wrfda_fr_6 ]] + cd wrfda_fr_6 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_2959.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 600000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30618 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_2404.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150448 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_7 + export LCR_DIR + [[ ! -e wrfda_cr_7 ]] + cd wrfda_cr_7 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_8305.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 7 '*' 100000 + bc -l + NL_SEED_ARRAY2=700000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30646 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_17793.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150449 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_7 + export LMR_DIR + [[ ! -e wrfda_mr_7 ]] + cd wrfda_mr_7 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_16727.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30659 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_13534.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150450 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ ! -e wrfda_fr_7 ]] + cd wrfda_fr_7 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_20572.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 700000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30673 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_16051.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150451 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_8 + export LCR_DIR + [[ ! -e wrfda_cr_8 ]] + cd wrfda_cr_8 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_29621.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 8 '*' 100000 + bc -l + NL_SEED_ARRAY2=800000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30701 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11695.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150452 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_8 + export LMR_DIR + [[ ! -e wrfda_mr_8 ]] + cd wrfda_mr_8 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_5679.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30714 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_11767.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150453 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ ! -e wrfda_fr_8 ]] + cd wrfda_fr_8 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28910.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 800000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30728 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_9115.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150454 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_9 + export LCR_DIR + [[ ! -e wrfda_cr_9 ]] + cd wrfda_cr_9 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_11499.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 9 '*' 100000 + bc -l + NL_SEED_ARRAY2=900000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30756 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14604.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150455 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_9 + export LMR_DIR + [[ ! -e wrfda_mr_9 ]] + cd wrfda_mr_9 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_13085.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30769 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_15895.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150456 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ ! -e wrfda_fr_9 ]] + cd wrfda_fr_9 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_28243.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 900000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30783 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_14444.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150457 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LCR_DIR=wrfda_cr_10 + export LCR_DIR + [[ ! -e wrfda_cr_10 ]] + cd wrfda_cr_10 + rm -rf 31742_wrfda_cr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_12291.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da ob.bufr qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=196 + export NL_E_WE + NL_E_SN=168 + export NL_E_SN + NL_DX=27000 + export NL_DX + NL_DY=27000 + export NL_DY + NL_GRID_ID=1 + export NL_GRID_ID + NL_PARENT_ID=0 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1 + export NL_I_PARENT_START + NL_J_PARENT_START=1 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d01_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -f hhddmmyycc + NL_SEED_ARRAY1=0510061520 + export NL_SEED_ARRAY1 + echo 10 '*' 100000 + bc -l + NL_SEED_ARRAY2=1000000 + export NL_SEED_ARRAY2 + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 196, e_sn = 168, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000, dy = 27000, grid_id = 1, parent_id = 0, i_parent_start = 1, j_parent_start = 1, parent_grid_ratio = 1, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c3-4 + echo 2015061005 + L_YY=15 + export L_YY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + [[ 05 -ge 00 ]] + [[ 05 -lt 06 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/met_obs_prep_data/prepbufr.gdas.20150610.t00z.nr ob.bufr + cp ../../real/wrfinput_d01_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + JOBRND=31742_wrfda_cr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_cr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_cr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30811 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_cr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_cr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_22583.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150458 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LMR_DIR=wrfda_mr_10 + export LMR_DIR + [[ ! -e wrfda_mr_10 ]] + cd wrfda_mr_10 + rm -rf 31742_wrfda_mr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_21972.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=256 + export NL_E_WE + NL_E_SN=229 + export NL_E_SN + NL_DX=9000 + export NL_DX + NL_DY=9000 + export NL_DY + NL_GRID_ID=2 + export NL_GRID_ID + NL_PARENT_ID=1 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=80 + export NL_I_PARENT_START + NL_J_PARENT_START=45 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d02_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 256, e_sn = 229, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 9000, dy = 9000, grid_id = 2, parent_id = 1, i_parent_start = 80, j_parent_start = 45, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d02_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_mr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_mr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_mr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30824 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_mr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_mr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_12312.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150459 + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ ! -e wrfda_fr_10 ]] + cd wrfda_fr_10 + rm -rf 31742_wrfda_fr.log be.dat buddy_check check_max_iv cost_fn da_wrfvar.exe fg grad_fn gts_omb_oma_01 gts_omb_oma_01.0000 index_26948.html jo job.ksh LANDUSE.TBL namelist.input namelist.output.da qcstat_conv_01 rej_obs_conv_01.0000 rsl.error.0000 rsl.out.0000 statistics SUCCESS unpert_obs unpert_obs.0000 wrfvar_output + NL_E_WE=259 + export NL_E_WE + NL_E_SN=205 + export NL_E_SN + NL_DX=3000 + export NL_DX + NL_DY=3000 + export NL_DY + NL_GRID_ID=3 + export NL_GRID_ID + NL_PARENT_ID=2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=150 + export NL_I_PARENT_START + NL_J_PARENT_START=55 + export NL_J_PARENT_START + DA_INPUT_FILE=../../real/wrfinput_d03_2015-06-10_06:00:00 + export DA_INPUT_FILE + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfda_namelist.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &wrfvar1 print_detail_grad = false, var4d = false, multi_inc = 0, / &wrfvar2 / &wrfvar3 ob_format = 1, / &wrfvar4 use_synopobs = true, use_shipsobs = false, use_metarobs = true, use_soundobs = true, use_pilotobs = true, use_airepobs = true, use_geoamvobs = false, use_polaramvobs = false, use_bogusobs = false, use_buoyobs = false, use_profilerobs = false, use_satemobs = false, use_gpspwobs = false, use_gpsrefobs = false, use_ssmisobs = false, use_qscatobs = false, use_airsretobs = false, / &wrfvar5 check_max_iv = true, put_rand_seed = true, / &wrfvar6 ntmax = 100, / &wrfvar7 je_factor = 1.0, cv_options = 3, as1 = 0.25,2.0,1.0, as2 = 0.25,2.0,1.0, as3 = 0.25,2.0,1.0, as4 = 0.25,2.0,1.0, as5 = 0.25,2.0,1.0, / &wrfvar8 / &wrfvar9 / trace_use = true, / &wrfvar10 / &wrfvar11 cv_options_hum = 1, check_rh = 2, seed_array1 = 0510061520, seed_array2 = 1000000, calculate_cg_cost_fn = true, lat_stats_option = false, / &wrfvar12 / &wrfvar13 / &wrfvar14 / &wrfvar15 num_pseudo = 0, pseudo_x = 0, pseudo_y = 0, pseudo_z = 0, pseudo_err = 0.0, pseudo_val = 0.0 / &wrfvar16 ensdim_alpha = 0, alphacv_method = 2, alpha_corr_type = 3, alpha_corr_scale = 1500, alpha_std_dev = 1.0, alpha_vertloc = false, alpha_truncation = 1, / &wrfvar17 analysis_type = 'RANDOMCV', / &wrfvar18 analysis_date = '2015-06-10_06:00:00', / &wrfvar19 pseudo_var = 't', / &wrfvar20 / &wrfvar21 time_window_min = '2015-06-10_05:30:00', / &wrfvar22 time_window_max = '2015-06-10_06:30:00', / &wrfvar23 jcdfi_use = false, jcdfi_io = false, / &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, write_input = .true., inputout_interval = 360, debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 1, e_we = 259, e_sn = 205, e_vert = 37,37,37, p_top_requested = 1000., interp_type = 2, t_extrap_type = 2, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 3000, dy = 3000, grid_id = 3, parent_id = 2, i_parent_start = 150, j_parent_start = 55, parent_grid_ratio = 3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, mp_zero_out = 2, cu_rad_feedback = .true.,.true.,.true., progn = , cugd_avedx = 1, / &fdda / &dfi_control / &tc / &scm / &dynamics use_baseparam_fr_nml = .true., w_damping = 1, diff_opt = 2, km_opt = 4, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, base_temp = , damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, iso_temp = 200., khdif = , kvdif = , non_hydrostatic = .true.,.true.,.true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, time_step_sound = 0, rk_ord = , moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., real_data_init_type = , / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / EOF + cp ../../real/wrfinput_d03_2015-06-10_06:00:00 fg + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/run/be.dat.cv3 be.dat + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/run/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_wrfvar.exe ./. + RANDOM=31742 + JOBRND=31742_wrfda_fr + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrfda_fr normal+ 01:05:00 1 1 da_wrfvar.exe PARALLEL + JOBID=31742_wrfda_fr + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=da_wrfvar.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=30838 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrfda_fr #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_wrfda_fr.log #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./da_wrfvar.exe > index_4512.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150460 + let MEM=10+1 + [[ 11 -le 10 ]] + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + LCR_DIR=wrfda_cr_1 + export LCR_DIR + LMR_DIR=wrfda_mr_1 + export LMR_DIR + LFR_DIR=wrfda_fr_1 + export LFR_DIR + [[ -e wrfda_cr_1/wrfvar_output ]] + cp wrfda_cr_1/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e001 + [[ -e wrfda_mr_1/wrfvar_output ]] + cp wrfda_mr_1/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e001 + [[ -e wrfda_fr_1/wrfvar_output ]] + cp wrfda_fr_1/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + LCR_DIR=wrfda_cr_2 + export LCR_DIR + LMR_DIR=wrfda_mr_2 + export LMR_DIR + LFR_DIR=wrfda_fr_2 + export LFR_DIR + [[ -e wrfda_cr_2/wrfvar_output ]] + cp wrfda_cr_2/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e002 + [[ -e wrfda_mr_2/wrfvar_output ]] + cp wrfda_mr_2/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e002 + [[ -e wrfda_fr_2/wrfvar_output ]] + cp wrfda_fr_2/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + LCR_DIR=wrfda_cr_3 + export LCR_DIR + LMR_DIR=wrfda_mr_3 + export LMR_DIR + LFR_DIR=wrfda_fr_3 + export LFR_DIR + [[ -e wrfda_cr_3/wrfvar_output ]] + cp wrfda_cr_3/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e003 + [[ -e wrfda_mr_3/wrfvar_output ]] + cp wrfda_mr_3/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e003 + [[ -e wrfda_fr_3/wrfvar_output ]] + cp wrfda_fr_3/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + LCR_DIR=wrfda_cr_4 + export LCR_DIR + LMR_DIR=wrfda_mr_4 + export LMR_DIR + LFR_DIR=wrfda_fr_4 + export LFR_DIR + [[ -e wrfda_cr_4/wrfvar_output ]] + cp wrfda_cr_4/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e004 + [[ -e wrfda_mr_4/wrfvar_output ]] + cp wrfda_mr_4/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e004 + [[ -e wrfda_fr_4/wrfvar_output ]] + cp wrfda_fr_4/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + LCR_DIR=wrfda_cr_5 + export LCR_DIR + LMR_DIR=wrfda_mr_5 + export LMR_DIR + LFR_DIR=wrfda_fr_5 + export LFR_DIR + [[ -e wrfda_cr_5/wrfvar_output ]] + cp wrfda_cr_5/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e005 + [[ -e wrfda_mr_5/wrfvar_output ]] + cp wrfda_mr_5/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e005 + [[ -e wrfda_fr_5/wrfvar_output ]] + cp wrfda_fr_5/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + LCR_DIR=wrfda_cr_6 + export LCR_DIR + LMR_DIR=wrfda_mr_6 + export LMR_DIR + LFR_DIR=wrfda_fr_6 + export LFR_DIR + [[ -e wrfda_cr_6/wrfvar_output ]] + cp wrfda_cr_6/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e006 + [[ -e wrfda_mr_6/wrfvar_output ]] + cp wrfda_mr_6/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e006 + [[ -e wrfda_fr_6/wrfvar_output ]] + cp wrfda_fr_6/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + LCR_DIR=wrfda_cr_7 + export LCR_DIR + LMR_DIR=wrfda_mr_7 + export LMR_DIR + LFR_DIR=wrfda_fr_7 + export LFR_DIR + [[ -e wrfda_cr_7/wrfvar_output ]] + cp wrfda_cr_7/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e007 + [[ -e wrfda_mr_7/wrfvar_output ]] + cp wrfda_mr_7/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e007 + [[ -e wrfda_fr_7/wrfvar_output ]] + cp wrfda_fr_7/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + LCR_DIR=wrfda_cr_8 + export LCR_DIR + LMR_DIR=wrfda_mr_8 + export LMR_DIR + LFR_DIR=wrfda_fr_8 + export LFR_DIR + [[ -e wrfda_cr_8/wrfvar_output ]] + cp wrfda_cr_8/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e008 + [[ -e wrfda_mr_8/wrfvar_output ]] + cp wrfda_mr_8/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e008 + [[ -e wrfda_fr_8/wrfvar_output ]] + cp wrfda_fr_8/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + LCR_DIR=wrfda_cr_9 + export LCR_DIR + LMR_DIR=wrfda_mr_9 + export LMR_DIR + LFR_DIR=wrfda_fr_9 + export LFR_DIR + [[ -e wrfda_cr_9/wrfvar_output ]] + cp wrfda_cr_9/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e009 + [[ -e wrfda_mr_9/wrfvar_output ]] + cp wrfda_mr_9/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e009 + [[ -e wrfda_fr_9/wrfvar_output ]] + cp wrfda_fr_9/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + LCR_DIR=wrfda_cr_10 + export LCR_DIR + LMR_DIR=wrfda_mr_10 + export LMR_DIR + LFR_DIR=wrfda_fr_10 + export LFR_DIR + [[ -e wrfda_cr_10/wrfvar_output ]] + cp wrfda_cr_10/wrfvar_output wrfinput_d01_2015-06-10_06:00:00.e010 + [[ -e wrfda_mr_10/wrfvar_output ]] + cp wrfda_mr_10/wrfvar_output wrfinput_d02_2015-06-10_06:00:00.e010 + [[ -e wrfda_fr_10/wrfvar_output ]] + cp wrfda_fr_10/wrfvar_output wrfinput_d03_2015-06-10_06:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + P_DATE=2015061007 + export P_DATE + [[ 2015061007 -le 2015061006 ]] + NL_E_WE=196,256,259 + export NL_E_WE + NL_E_SN=168,229,205 + export NL_E_SN + NL_DX=27000,9000,3000 + export NL_DX + NL_DY=27000,9000,3000 + export NL_DY + NL_GRID_ID=1,2,3 + export NL_GRID_ID + NL_PARENT_ID=0,1,2 + export NL_PARENT_ID + NL_PARENT_GRID_RATIO=1,3,3 + export NL_PARENT_GRID_RATIO + NL_I_PARENT_START=1,80,150 + export NL_I_PARENT_START + NL_J_PARENT_START=1,45,55 + export NL_J_PARENT_START + [[ true == true ]] + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e001 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31269 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2435.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150461 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e001 + let MEM=1+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e002 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31481 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_24118.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150462 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e002 + let MEM=2+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e003 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31694 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_8936.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150463 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e003 + let MEM=3+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e004 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=31917 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_27810.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150464 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e004 + let MEM=4+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e005 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32129 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_2519.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150465 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e005 + let MEM=5+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e006 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32341 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3450.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150466 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e006 + let MEM=6+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e007 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=32552 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_20717.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150467 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e007 + let MEM=7+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e008 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=301 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_17951.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150468 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e008 + let MEM=8+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e009 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=527 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_3003.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150469 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e009 + let MEM=9+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + [[ -f wrfbdy_this ]] + DA_BDY_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export DA_BDY_PATH + DA_BDY_FILE=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 + export DA_BDY_FILE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_this + rm -rf pert_wrf_bc + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/work/pert_wrf_bc ./. + rm -rf input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_input.nml.ksh + echo off off + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_model_nml write_binary_restart_files = .true., netCDF_large_file_support = .true., / EOF + [[ -f input.nml ]] + mv input.nml_temp input.nml + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_assim_tools_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &assim_tools_nml filter_kind = 1, cutoff = 0.1, sort_obs_inc = .false., spread_restoration = .false., sampling_error_correction = .true., adaptive_localization_threshold = 2000, print_every_nth_obs = 1000, special_localization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_localization_cutoffs = 0.1,0.1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_cov_cutoff_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &cov_cutoff_nml select_localization = 1, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_dart_to_wrf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &dart_to_wrf_nml model_advance_file = .false., adv_mod_command = 'mpirun -np 64 ./wrf.exe', dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_ensemble_manager_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &ensemble_manager_nml single_restart_file_in = .false., single_restart_file_out = .false., perturbation_amplitude = 0.2, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_filter_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &filter_nml async = 2, adv_ens_command = './advance_model.csh', ens_size = 10, start_from_restart = .true., output_restart = .true., obs_sequence_in_name = 'obs_seq.out', obs_sequence_out_name = 'obs_seq.final', restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, num_output_state_members = 0, num_output_obs_members = 10, output_interval = 1, num_groups = 1, input_qc_threshold = 4.0, outlier_threshold = 3., enable_special_outlier_code = .false., output_forward_op_errors = .false., output_timestamps = .true., output_inflation = .true., trace_execution = .true., inf_flavor = 2, 0, inf_initial_from_restart = .true., .true., inf_sd_initial_from_restart = .true., .true., inf_output_restart = .true., .true., inf_deterministic = .true., .true., inf_in_file_name = 'prior_inflate_ic_old', 'post_inflate_ics', inf_out_file_name = 'prior_inflate_ic_new', 'prior_inflate_restart', inf_diag_file_name = 'prior_inflate_diag', 'post_inf_diag', inf_initial = 1.0, 1.0, inf_sd_initial = 0.6, 0.0, inf_damping = 0.9, 1.0, inf_lower_bound = 1.0, 1.0, inf_upper_bound = 100.0, 100.0, inf_sd_lower_bound = 0.6, 0.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_location_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &location_nml horiz_dist_only = .false., vert_normalization_pressure = 100000.0, vert_normalization_height = 10000.0, vert_normalization_level = 20.0, vert_normalization_scale_height = 1.5, special_vert_normalization_obs_types = 'IASI_CO_RETRIEVAL','MOPITT_CO_RETRIEVAL', special_vert_normalization_pressures = 100000.0,100000.0, special_vert_normalization_heights = 10000.0,10000.0, special_vert_normalization_levels = 20.0,20.0, special_vert_normalization_scale_heights = 1.5,1.5, approximate_distance = .false., nlon = 141, nlat = 72, output_box_info = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_model_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &model_nml add_emiss = .false., use_varloc = .true., use_indep_chem_assim = .false., default_state_variables = .false., conv_state_variables = 'U', 'KIND_U_WIND_COMPONENT', 'TYPE_U', 'UPDATE','999', 'V', 'KIND_V_WIND_COMPONENT', 'TYPE_V', 'UPDATE','999', 'W', 'KIND_VERTICAL_VELOCITY', 'TYPE_W', 'UPDATE','999', 'PH', 'KIND_GEOPOTENTIAL_HEIGHT', 'TYPE_GZ', 'UPDATE','999', 'T', 'KIND_POTENTIAL_TEMPERATURE','TYPE_T', 'UPDATE','999', 'MU', 'KIND_PRESSURE', 'TYPE_MU', 'UPDATE','999', 'QVAPOR','KIND_VAPOR_MIXING_RATIO', 'TYPE_QV', 'UPDATE','999', 'QRAIN', 'KIND_RAINWATER_MIXING_RATIO','TYPE_QRAIN', 'UPDATE','999', 'QCLOUD','KIND_CLOUD_LIQUID_WATER', 'TYPE_QCLOUD', 'UPDATE','999', 'QSNOW', 'KIND_SNOW_MIXING_RATIO', 'TYPE_QSNOW', 'UPDATE','999', 'QICE', 'KIND_CLOUD_ICE', 'TYPE_QICE', 'UPDATE','999', 'U10', 'KIND_U_WIND_COMPONENT', 'TYPE_U10','UPDATE','999', 'V10', 'KIND_V_WIND_COMPONENT', 'TYPE_V10','UPDATE','999', 'T2', 'KIND_TEMPERATURE', 'TYPE_T2', 'UPDATE','999', 'TH2', 'KIND_POTENTIAL_TEMPERATURE','TYPE_TH2','UPDATE','999', 'Q2', 'KIND_SPECIFIC_HUMIDITY', 'TYPE_Q2', 'UPDATE','999', 'PSFC', 'KIND_PRESSURE', 'TYPE_PS', 'UPDATE','999', 'o3', 'KIND_O3', 'TYPE_O3', 'UPDATE','999', 'co', 'KIND_CO', 'TYPE_CO', 'UPDATE','999', 'no', 'KIND_NO', 'TYPE_NO', 'UPDATE','999', 'no2', 'KIND_NO2', 'TYPE_NO2', 'UPDATE','999', 'hno3', 'KIND_HNO3', 'TYPE_HNO3', 'UPDATE','999', 'hno4', 'KIND_HNO4', 'TYPE_HNO4', 'UPDATE','999', 'n2o5', 'KIND_N2O5', 'TYPE_N2O5', 'UPDATE','999', 'c2h6', 'KIND_C2H6', 'TYPE_C2H6', 'UPDATE','999', 'acet', 'KIND_ACET', 'TYPE_ACET', 'UPDATE','999', 'hcho', 'KIND_HCHO', 'TYPE_HCHO', 'UPDATE','999', 'c2h4', 'KIND_C2H4', 'TYPE_C2H4', 'UPDATE','999', 'c3h6', 'KIND_C3H6', 'TYPE_C3H6', 'UPDATE','999', 'tol', 'KIND_TOL', 'TYPE_TOL', 'UPDATE','999', 'mvk', 'KIND_MVK', 'TYPE_MVK', 'UPDATE','999', 'bigalk','KIND_BIGALK', 'TYPE_BIGALK', 'UPDATE','999', 'isopr', 'KIND_ISOPR', 'TYPE_ISOPR', 'UPDATE','999', 'macr', 'KIND_MACR', 'TYPE_MACR', 'UPDATE','999', 'c3h8', 'KIND_C3H8', 'TYPE_C3H8', 'UPDATE','999', 'c10h16','KIND_C10H16', 'TYPE_C10H16', 'UPDATE','999', 'DUST_1','KIND_DST01', 'TYPE_DST01','UPDATE','999', 'DUST_2','KIND_DST02', 'TYPE_DST02','UPDATE','999', 'DUST_3','KIND_DST03', 'TYPE_DST03','UPDATE','999', 'DUST_4','KIND_DST04', 'TYPE_DST04','UPDATE','999', 'DUST_5','KIND_DST05', 'TYPE_DST05','UPDATE','999', 'BC1','KIND_CB1', 'TYPE_EXTCOF','UPDATE','999', 'BC2','KIND_CB2', 'TYPE_EXTCOF','UPDATE','999', 'OC1','KIND_OC1', 'TYPE_EXTCOF','UPDATE','999', 'OC2','KIND_OC2', 'TYPE_EXTCOF','UPDATE','999', 'sulf','KIND_SO4', 'TYPE_SO4' ,'UPDATE','999', 'TAUAER1','KIND_TAUAER1', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER2','KIND_TAUAER2', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER3','KIND_TAUAER3', 'TYPE_EXTCOF','UPDATE','999', 'TAUAER4','KIND_TAUAER4', 'TYPE_EXTCOF','UPDATE','999', 'PM10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'PM2_5_DRY','KIND_PM25' , 'TYPE_EXTCOF','UPDATE','999', 'P10','KIND_PM10', 'TYPE_EXTCOF','UPDATE','999', 'P25','KIND_PM25', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_1','KIND_SSLT01', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_2','KIND_SSLT02', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_3','KIND_SSLT03', 'TYPE_EXTCOF','UPDATE','999', 'SEAS_4','KIND_SSLT04', 'TYPE_EXTCOF','UPDATE','999' emiss_chemi_variables = 'E_CO', 'KIND_E_CO', 'TYPE_E_CO', 'UPDATE','999', 'E_NO' ,'KIND_E_NO', 'TYPE_E_NO', 'UPDATE','999' emiss_firechemi_variables = 'ebu_in_co' ,'KIND_EBU_CO', 'TYPE_EBU_CO', 'UPDATE','999', 'ebu_in_no' ,'KIND_EBU_NO', 'TYPE_EBU_NO', 'UPDATE','999', 'ebu_in_oc' ,'KIND_EBU_OC', 'TYPE_EBU_OC', 'UPDATE','999', 'ebu_in_bc' ,'KIND_EBU_BC', 'TYPE_EBU_BC', 'UPDATE','999', 'ebu_in_c2h4' ,'KIND_EBU_c2h4', 'TYPE_EBU_c2h4', 'UPDATE','999', 'ebu_in_ch2o' ,'KIND_EBU_ch2o', 'TYPE_EBU_ch2o', 'UPDATE','999', 'ebu_in_ch3oh' ,'KIND_EBU_ch3oh', 'TYPE_EBU_ch3oh','UPDATE','999' wrf_state_bounds = 'QVAPOR','0.0','NULL','CLAMP', 'QRAIN', '0.0','NULL','CLAMP', 'QCLOUD','0.0','NULL','CLAMP', 'QSNOW', '0.0','NULL','CLAMP', 'QICE', '0.0','NULL','CLAMP', 'o3', '0.','NULL','CLAMP', 'co', '1.e-4','NULL','CLAMP', 'no', '0.0','NULL','CLAMP', 'no2', '0.0','NULL','CLAMP', 'hno3', '0.0','NULL','CLAMP', 'hno4', '0.0','NULL','CLAMP', 'n2o5', '0.0','NULL','CLAMP', 'c2h6', '0.0','NULL','CLAMP', 'acet' '0.0','NULL','CLAMP', 'hcho' '0.0','NULL','CLAMP', 'c2h4', '0.0','NULL','CLAMP', 'c3h6', '0.0','NULL','CLAMP', 'tol', '0.0','NULL','CLAMP', 'mvk', '0.0','NULL','CLAMP', 'bigalk','0.0','NULL','CLAMP', 'isopr', '0.0','NULL','CLAMP', 'macr', '0.0','NULL','CLAMP', 'c3h8' ,'0.0','NULL','CLAMP', 'c10h16','0.0','NULL','CLAMP', 'DUST_1','0.0','NULL','CLAMP', 'DUST_2','0.0','NULL','CLAMP', 'DUST_3','0.0','NULL','CLAMP', 'DUST_4','0.0','NULL','CLAMP', 'DUST_5','0.0','NULL','CLAMP', 'BC1','0.0','NULL','CLAMP', 'BC2','0.0','NULL','CLAMP', 'OC1','0.0','NULL','CLAMP', 'OC2','0.0','NULL','CLAMP', 'sulf','0.0','NULL','CLAMP', 'TAUAER1','0.0','NULL','CLAMP', 'TAUAER2','0.0','NULL','CLAMP', 'TAUAER3','0.0','NULL','CLAMP', 'TAUAER4','0.0','NULL','CLAMP', 'PM10','0.0','NULL','CLAMP', 'PM2_5_DRY','0.0','NULL','CLAMP', 'P10','0.0','NULL','CLAMP', 'P25','0.0','NULL','CLAMP', 'SEAS_1','0.0','NULL','CLAMP', 'SEAS_2','0.0','NULL','CLAMP', 'SEAS_3','0.0','NULL','CLAMP', 'SEAS_4','0.0','NULL','CLAMP', 'E_CO','0.0','NULL','CLAMP', 'E_NO','0.0','NULL','CLAMP', 'ebu_in_co','0.0','NULL','CLAMP', 'ebu_in_no','0.0','NULL','CLAMP', 'ebu_in_oc','0.0','NULL','CLAMP', 'ebu_in_bc','0.0','NULL','CLAMP', 'ebu_in_c2h4','0.0','NULL','CLAMP', 'ebu_in_ch2o','0.0','NULL','CLAMP', 'ebu_in_ch3oh','0.0','NULL','CLAMP' output_state_vector = .false., num_domains = 02, calendar_type = 3, assimilation_period_seconds = 3600, vert_localization_coord = 4, center_search_half_length = 500000., center_spline_grid_scale = 10, sfc_elev_max_diff = 100.0, circulation_pres_level = 80000.0, circulation_radius = 108000.0, allow_obs_below_vol = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_radar_mod_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_radar_mod_nml apply_ref_limit_to_obs = .false., reflectivity_limit_obs = -10.0, lowest_reflectivity_obs = -10.0, apply_ref_limit_to_fwd_op = .false., reflectivity_limit_fwd_op = -10.0, lowest_reflectivity_fwd_op = -10.0, max_radial_vel_obs = 1000000, allow_wet_graupel = .false., microphysics_type = 2, allow_dbztowt_conv = .false., dielectric_factor = 0.224, n0_rain = 8.0e6, n0_graupel = 4.0e6, n0_snow = 3.0e6, rho_rain = 1000.0, rho_graupel = 400.0, rho_snow = 100.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_diag_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_diag_nml plevel = , obs_sequence_name = 'obs_seq.final', obs_sequence_list = 'file_list.txt', first_bin_center = 2015, 6, 10, 5, 0, 0, last_bin_center = 2015, 6, 10, 5, 0, 0, bin_separation = 0, 0, 0, 6, 0, 0, bin_width = 0, 0, 0, 0, 0, 0, time_to_skip = 0, 0, 0, 0, 0, 0, max_num_bins = 1000, Nregions = 1, lonlim1 = 235.0, lonlim2 = 295.0, latlim1 = 25.0, latlim2 = 55.0, reg_names = 'North America', print_mismatched_locs = .false., verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_kind_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_kind_nml assimilate_these_obs_types = 'AIRNOW_O3', 'TOLNET_O3', 'MOPITT_CO_RETRIEVAL', 'IASI_CO_RETRIEVAL', 'IASI_O3_RETRIEVAL', 'MODIS_AOD_RETRIEVAL', 'OMI_NO2_COLUMN', evaluate_these_obs_types = , / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_selection_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_selection_nml filename_seq = 'obs_seq.out', filename_seq_list = 'null', filename_out = 'obs_seq.processed', selections_file = 'obsdef_mask.txt', selections_is_obs_seq = .false., print_only = .false., calendar = 'gregorian', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_coverage_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_coverage_nml obs_sequence_list = 'obs_coverage_list.txt', obs_sequence_name = 'null', obs_of_interest = 'null', textfile_out = 'obsdef_mask.txt', netcdf_out = 'obsdef_mask.nc', lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, nTmin = 8, nTmax = 100, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_seq_to_netcdf_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_seq_to_netcdf_nml obs_sequence_name = 'null', obs_sequence_list = 'obs_coverage_list.txt', append_to_netcdf = .false., lonlim1 = 0.0, lonlim2 = 360.0, latlim1 = -90.0, latlim2 = 90.0, verbose = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_nml write_binary_obs_sequence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_sequence_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_sequence_tool_nml num_input_files = 1, filename_seq = 'obs_seq.out', filename_out = 'obs_seq.processed', first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, obs_types = '', keep_types = .false., print_only = .false., min_lat = 10., max_lat = 80., min_lon = 250., max_lon = 310., qc_metadata = '', min_qc = 0, max_qc = 5, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_perfect_model_obs_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &perfect_model_obs_nml start_from_restart = .true., output_restart = .true., async = 2, init_time_days = -1, init_time_seconds = -1, first_obs_days = 151370, first_obs_seconds = 16201, last_obs_days = 151370, last_obs_seconds = 19800, output_interval = 1, restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', obs_seq_in_file_name = 'obs_seq.in', obs_seq_out_file_name = 'obs_seq.out', adv_ens_command = './advance_model.csh', output_timestamps = .false., trace_execution = .false., output_forward_op_errors = .false., print_every_nth_obs = -1, silence = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_preprocess_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &preprocess_nml input_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_kind_mod.F90', output_obs_kind_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_kind_mod.f90', input_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/DEFAULT_obs_def_mod.F90', output_obs_def_mod_file = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_kind/obs_def_mod.f90', input_files = '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_reanalysis_bufr_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_radar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_metar_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_dew_point_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_altimeter_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gps_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_gts_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_vortex_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_AIRNOW_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_TOLNET_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_PANDA_OBS_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_IASI_O3_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_OMI_NO2_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MOPITT_CO_mod.f90', '/home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/obs_def/obs_def_MODIS_AOD_mod.f90', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_reg_factor_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF ®_factor_nml select_regression = 1, input_reg_file = 'time_mean_reg', save_reg_diagnostics = .false., reg_diagnostics_file = 'reg_diagnostics', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_replace_wrf_fields_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &replace_wrf_fields_nml debug = .false., fail_on_missing_field = .false., fieldnames = 'SNOWC', 'ALBBCK', 'TMN', 'TSK', 'SH2O', 'SMOIS', 'SEAICE', 'HGT_d01', 'TSLB', 'SST', 'SNOWH', 'SNOW', fieldlist_file = ' ', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_tool_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_tool_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true., overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, gregorian_cal = .true., print_only = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_restart_file_utility_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &restart_file_utility_nml input_file_name = 'assim_model_state_tp', output_file_name = 'assim_model_state_ic', ens_size = 10, single_restart_file_in = .false., single_restart_file_out = .false., write_binary_restart_files = .true., overwrite_data_time = .false., new_data_days = -1, new_data_secs = -1, input_is_model_advance_file = .false., output_is_model_advance_file = .true.,, overwrite_advance_time = .true., new_advance_days = 151370, new_advance_secs = 21600, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_schedule_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &schedule_nml calendar = 'Gregorian', first_bin_start = 2008, 6, 1, 0, 0, 0, first_bin_end = 2008, 6, 1, 0, 0, 0, last_bin_end = 2008, 6, 1, 0, 0, 0, bin_interval_days = 0, bin_interval_seconds = 21600, max_num_bins = 1000, print_table = .true., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_smoother_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &smoother_nml num_lags = 0, start_from_restart = .true., output_restart = .true., restart_in_file_name = 'filter_ic_old', restart_out_file_name = 'filter_ic_new', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_utilities_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &utilities_nml TERMLEVEL = 1, module_details = .false., logfilename = 'dart_log.out', nmlfilename = 'dart_log.nml', write_nml = 'file', / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_obs_preproc_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_obs_preproc_nml obs_boundary = 0.0, increase_bdy_error = .false., maxobsfac = 2.5, obsdistbdy = 15.0, sfc_elevation_check = .false., sfc_elevation_tol = 300.0, obs_pressure_top = 10000., obs_height_top = 200000000000000.0, include_sig_data = .true., tc_sonde_radii = -1.0, superob_aircraft = .false., aircraft_horiz_int = 36.0, aircraft_pres_int = 2500.0, superob_sat_winds = .false., sat_wind_horiz_int = 100.0, sat_wind_pres_int = 2500.0, / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_wrf_to_dart_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &wrf_to_dart_nml dart_restart_name = 'dart_wrf_vector', print_data_ranges = .false., debug = .false., add_emiss = .false., use_log_co = .false., use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_MOPITT_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_MOPITT_CO_nml MOPITT_CO_retrieval_type = 'RETR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_CO_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_CO_nml IASI_CO_retrieval_type = 'RAWR', use_log_co = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/namelist_scripts/DART/dart_create_obs_def_IASI_O3_nml.ksh + rm -f input.nml_temp + touch input.nml_temp + cat + 1> input.nml_temp 0<< \EOF &obs_def_IASI_O3_nml IASI_O3_retrieval_type = 'RAWR', use_log_o3 = .false., / EOF + [[ -f input.nml ]] + cat input.nml_temp + 1>> input.nml + rm input.nml_temp + echo on on + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_END_DATE=2015061006 + export L_END_DATE + TRANDOM=31742 + [[ 2015061005 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + NEXT_L_DATE=2015061006 + export NEXT_L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 -W + 2> /dev/null + NEXT_ANALYSIS_DATE=2015-06-10_06:00:00 + export NEXT_ANALYSIS_DATE + rm -rf wrfinput_this + rm -rf wrfinput_next + DA_INPUT_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export DA_INPUT_PATH + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_this + ln -fs /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_06:00:00.e010 wrfinput_next + JOBRND=31742_pert_bc + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_pert_bc normal+ 01:05:00 1 1 pert_wrf_bc SERIAL + JOBID=31742_pert_bc + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:05:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=pert_wrf_bc + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=749 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_pert_bc #SBATCH --qos normal+ #SBATCH --time 01:05:00 #SBATCH --output 31742_pert_bc.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./pert_wrf_bc > index_5324.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150470 + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -lt 2015061006 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 0 -W + 2> /dev/null + ANALYSIS_DATE=2015-06-10_05:00:00 + export ANALYSIS_DATE + mv wrfbdy_this wrfbdy_d01_2015-06-10_05:00:00.e010 + let MEM=10+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + FILE=exo_coldens.nc + export FILE + rm -rf exo_coldens.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/exo_coldens.nc exo_coldens.nc + FILE=exo_coldens.exe + export FILE + rm -rf exo_coldens.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/exo_coldens.exe exo_coldens.exe + FILE=exo_coldens.inp + export FILE + rm -rf exo_coldens.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> exo_coldens.inp + ./exo_coldens.exe + 0< exo_coldens.inp make_exo_coldens: created file exo_coldens_d01 make_exo_coldens: created file exo_coldens_d02 make_exo_coldens: created file exo_coldens_d03 ============================================= make_exo_coldens: completed successfully ============================================= + FILE_CR=exo_coldens_d01 + export FILE_CR + FILE_MR=exo_coldens_d02 + export FILE_MR + FILE_FR=exo_coldens_d03 + export FILE_FR + [[ ! -e exo_coldens_d01 ]] + [[ ! -e exo_coldens_d02 ]] + [[ ! -e exo_coldens_d03 ]] + echo EXO_COLDENS SUCCESS EXO_COLDENS SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + FILE=season_wes_usgs.nc + export FILE + rm -rf season_wes_usgs.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/wes_coldens/season_wes_usgs.nc season_wes_usgs.nc + FILE=wesely.exe + export FILE + rm -rf wesely.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_WES_COLDENS/work/wesely.exe wesely.exe + FILE=wesely.inp + export FILE + rm -rf wesely.inp + cat + 0<< \EOF &control domains = 3, / EOF 1> wesely.inp + ./wesely.exe + 0< wesely.inp make_wes: min,max usgs seasonal wes = 1.00000000 5.00000000 make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d01.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d02.nc make_wes: min,max seasonal pft = 1 5 make_wes: created file wrf_season_wes_usgs_d03.nc ============================================= make_wes: completed successfully ============================================= + FILE_CR=wrf_season_wes_usgs_d01.nc + export FILE_CR + FILE_MR=wrf_season_wes_usgs_d02.nc + export FILE_MR + FILE_FR=wrf_season_wes_usgs_d03.nc + export FILE_FR + [[ ! -e wrf_season_wes_usgs_d01.nc ]] + [[ ! -e wrf_season_wes_usgs_d02.nc ]] + [[ ! -e wrf_season_wes_usgs_d03.nc ]] + echo WESELY SUCCESS WESELY SUCCESS + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061005 -eq 2015061005 ]] + rm -rf wrfbiochemi_d01 + rm -rf wrfbiochemi_d02 + rm -rf wrfbiochemi_d03 + rm -rf 'btr*.nc' + rm -rf 'DSW*.nc' + rm -rf 'hrb*.nc' + rm -rf 'iso*.nc' + rm -rf 'lai*.nc' + rm -rf 'ntr*.nc' + rm -rf 'shr*.nc' + rm -rf 'TAS*.nc' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=845 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_26512.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150471 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_05:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_05:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d01_2015-06-10_06:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d02_2015-06-10_06:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d03_2015-06-10_06:00:00 wrfinput_d03 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ 2015061006 -eq 2015061005 ]] + rm -rf btr200121_30sec.nc + rm -rf DSW.nc + rm -rf hrb200121_30sec.nc + rm -rf isoall200021_30sec.nc + rm -rf laiv200301_30sec.nc laiv200302_30sec.nc laiv200303_30sec.nc laiv200304_30sec.nc laiv200305_30sec.nc laiv200306_30sec.nc laiv200307_30sec.nc laiv200308_30sec.nc laiv200309_30sec.nc laiv200310_30sec.nc laiv200311_30sec.nc laiv200312_30sec.nc + rm -rf ntr200121_30sec.nc + rm -rf shr200121_30sec.nc + rm -rf TAS.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/btr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/DSW.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/hrb200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/isoall200021_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200301_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200302_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200303_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200304_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200305_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200306_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200307_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200308_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200309_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200310_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200311_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/laiv200312_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/ntr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/shr200121_30sec.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/bio_emissions/MEGAN-DATA/TAS.nc ./. + FILE=megan_bio_emiss.exe + export FILE + rm -rf megan_bio_emiss.exe + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_MEGAN_BIO/work/megan_bio_emiss.exe megan_bio_emiss.exe + FILE=megan_bio_emiss.inp + export FILE + rm -rf megan_bio_emiss.inp + cat + 0<< \EOF &control domains = 3, start_lai_mnth = 1, end_lai_mnth = 12 / EOF 1> megan_bio_emiss.inp + RANDOM=31742 + JOBRND=479_bio + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_bio normal+ 01:20:00 1 1 'megan_bio_emiss.exe < megan_bio_emiss.inp' SERIAL + JOBID=479_bio + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:20:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='megan_bio_emiss.exe < megan_bio_emiss.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=2890 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_bio #SBATCH --qos normal+ #SBATCH --time 01:20:00 #SBATCH --output 479_bio.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./megan_bio_emiss.exe < megan_bio_emiss.inp > index_7159.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150508 + FILE_CR=wrfbiochemi_d01 + export FILE_CR + FILE_MR=wrfbiochemi_d02 + export FILE_MR + FILE_FR=wrfbiochemi_d03 + export FILE_FR + [[ ! -e wrfbiochemi_d01 ]] + [[ ! -e wrfbiochemi_d02 ]] + [[ ! -e wrfbiochemi_d03 ]] + echo WRFCHEM_BIO SUCCESS WRFCHEM_BIO SUCCESS + mv wrfbiochemi_d01 wrfbiochemi_d01_2015-06-10_06:00:00 + mv wrfbiochemi_d02 wrfbiochemi_d02_2015-06-10_06:00:00 + mv wrfbiochemi_d03 wrfbiochemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire + FILE_CR=wrfinput_d01 + export FILE_CR + FILE_MR=wrfinput_d02 + export FILE_MR + FILE_FR=wrfinput_d03 + export FILE_FR + rm -rf wrfinput_d01 + rm -rf wrfinput_d02 + rm -rf wrfinput_d03 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + rm -rf 'GLOBAL*.txt' + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2014_MOZ4_7112014.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2015_MOZ4_11032016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_2016_MOZ4_11022016.txt /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/GLOBAL_FINNv15_JULSEP2014_MOZ4_09222014.txt ./. + FILE=fire_emis.exe + export FILE + rm -rf fire_emis.exe + ln -sf /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_FINN_FIRE/work/fire_emis.exe fire_emis.exe + rm -rf grass_from_img.nc + rm -rf shrub_from_img.nc + rm -rf tempfor_from_img.nc + rm -rf tropfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/grass_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/shrub_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tempfor_from_img.nc + ln -sf /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/fire_emissions/tropfor_from_img.nc + FILE=fire_emis.mozc.inp + export FILE + rm -rf fire_emis.mozc.inp + cat + 0<< \EOF &control domains = 3, fire_filename(1) = 'GLOBAL_FINNv15_2015_MOZ4_11032016.txt', start_date = '2015-06-10', end_date = '2015-06-10', fire_directory = './', wrf_directory = './', wrf2fire_map = 'co -> CO', 'no -> NO', 'so2 -> SO2', 'bigalk -> BIGALK', 'bigene -> BIGENE', 'c2h4 -> C2H4', 'c2h5oh -> C2H5OH', 'c2h6 -> C2H6', 'c3h8 -> C3H8','c3h6 -> C3H6','ch2o -> CH2O', 'ch3cho -> CH3CHO', 'ch3coch3 -> CH3COCH3','ch3oh -> CH3OH','mek -> MEK','toluene -> TOLUENE', 'nh3 -> NH3','no2 -> NO2','open -> BIGALD','c10h16 -> C10H16', 'ch3cooh -> CH3COOH','cres -> CRESOL','glyald -> GLYALD','mgly -> CH3COCHO', 'gly -> CH3COCHO','acetol -> HYAC','isop -> ISOP','macr -> MACR' 'mvk -> MVK', 'oc -> OC;aerosol','bc -> BC;aerosol' / EOF 1> fire_emis.mozc.inp + RANDOM=31742 + JOBRND=479_fire + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fire normal+ 01:40:00 1 1 'fire_emis.exe < fire_emis.mozc.inp' SERIAL + JOBID=479_fire + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE='fire_emis.exe < fire_emis.mozc.inp' + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=4695 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fire #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fire.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./fire_emis.exe < fire_emis.mozc.inp > index_19392.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150588 + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_05:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_05:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_05:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_05:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_05:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_05:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + DD_DATE=20150610 + export DD_DATE + FILE_CR=wrffirechemi_d01_2015-06-10_06:00:00 + export FILE_CR + FILE_MR=wrffirechemi_d02_2015-06-10_06:00:00 + export FILE_MR + FILE_FR=wrffirechemi_d03_2015-06-10_06:00:00 + export FILE_FR + [[ ! -e wrffirechemi_d01_2015-06-10_06:00:00 ]] + [[ ! -e wrffirechemi_d02_2015-06-10_06:00:00 ]] + [[ ! -e wrffirechemi_d03_2015-06-10_06:00:00 ]] + echo WRFFIRE SUCCESS WRFFIRE SUCCESS + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + cut -c1-4 + echo 2015061005 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_05:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_05:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + cut -c1-4 + echo 2015061006 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + FILE_PATH=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions + export FILE_PATH + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d01_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d02_2015-06-10_06:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/anthro_emissions/wrfchemi_d03_2015-06-10_06:00:00 ./. + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d02_2015-06-10_06:00:00 + chmod a+rwx wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/work/mozbc.exe ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_parent_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_CR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_MR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/runICBC_setN_rt_FR.ksh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/random_correlated_perts_mirror.py ./APM_random.py + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_CR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_MR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/run_mozbc_rt_FR.csh ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set0 ./. + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT/set00 ./. + [[ 2015 -eq 2015 ]] + MOZBC_DATA=/h0005.nc + export MOZBC_DATA + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 1 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d01.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_cr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_cr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_cr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150613 + ./runICBC_parent_rt_CR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export CHEMDIR + WRFINP_CR=wrfinput_d01_2015-06-10_05:00:00 + export WRFINP_CR + WRFBDY_CR=wrfbdy_d01_2015-06-10_05:00:00 + export WRFBDY_CR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 ./. + mv wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e000 + mv wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_d01_2015-06-10_05:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + rm -f mozbc.bc.inp.set00 + cat mozbc.bc.inp set00 + 1> mozbc.bc.inp.set00 + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5444 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e000 ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.5444 rm -f tmp.5444 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfinput_d01_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set files = ( wrfinput_d01_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5512 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set00 ens=000 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e000 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.5512 rm -f tmp.5512 if ( 000 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfbdy_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e000 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.5512 rm -f tmp.5512 if ( wrfinput_d01_2015-06-10_05:00:00.e000 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00.e000 echo wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00.e000 ln -s wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e000 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e000 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e000 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e000; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + mv wrfinput_d01_2015-06-10_05:00:00.e000 wrfinput_d01_2015-06-10_05:00:00 + mv wrfbdy_d01_2015-06-10_05:00:00.e000 wrfbdy_d01_2015-06-10_05:00:00 + ./runICBC_setN_rt_CR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export CHEMDIR + let MEM=1 + [[ 1 -le 10 ]] + IENS=1 + export IENS + [[ 1 -lt 100 ]] + IENS=01 + export IENS + [[ 1 -lt 10 ]] + IENS=001 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e001 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e001 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 mozbc.ic.inp.set1a + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1a + echo + 1> tmp.txt + cat mozbc.ic.inp.set1a tmp.txt + 1> mozbc.ic.inp.set1 + rm -f mozbc.bc.inp.set1 mozbc.bc.inp.set1a + cat mozbc.bc.inp set1 + 1> mozbc.bc.inp.set1a + echo + 1> tmp.txt + cat mozbc.bc.inp.set1a tmp.txt + 1> mozbc.bc.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5598 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e001 ls -1 wrfinput_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.5598 rm -f tmp.5598 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfinput_d01_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e001 set files = ( wrfinput_d01_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5665 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set1 ens=001 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e001 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.5665 rm -f tmp.5665 if ( 001 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfbdy_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e001 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.5665 rm -f tmp.5665 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e001 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e001 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e001; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 2 -le 10 ]] + IENS=2 + export IENS + [[ 2 -lt 100 ]] + IENS=02 + export IENS + [[ 2 -lt 10 ]] + IENS=002 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e002 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e002 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 mozbc.ic.inp.set2a + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2a + echo + 1> tmp.txt + cat mozbc.ic.inp.set2a tmp.txt + 1> mozbc.ic.inp.set2 + rm -f mozbc.bc.inp.set2 mozbc.bc.inp.set2a + cat mozbc.bc.inp set2 + 1> mozbc.bc.inp.set2a + echo + 1> tmp.txt + cat mozbc.bc.inp.set2a tmp.txt + 1> mozbc.bc.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5747 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e002 ls -1 wrfinput_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.5747 rm -f tmp.5747 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfinput_d01_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e002 set files = ( wrfinput_d01_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5815 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set2 ens=002 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e002 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.5815 rm -f tmp.5815 if ( 002 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfbdy_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e002 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.5815 rm -f tmp.5815 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e002 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e002 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e002; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 3 -le 10 ]] + IENS=3 + export IENS + [[ 3 -lt 100 ]] + IENS=03 + export IENS + [[ 3 -lt 10 ]] + IENS=003 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e003 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e003 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 mozbc.ic.inp.set3a + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3a + echo + 1> tmp.txt + cat mozbc.ic.inp.set3a tmp.txt + 1> mozbc.ic.inp.set3 + rm -f mozbc.bc.inp.set3 mozbc.bc.inp.set3a + cat mozbc.bc.inp set3 + 1> mozbc.bc.inp.set3a + echo + 1> tmp.txt + cat mozbc.bc.inp.set3a tmp.txt + 1> mozbc.bc.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5897 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e003 ls -1 wrfinput_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.5897 rm -f tmp.5897 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfinput_d01_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e003 set files = ( wrfinput_d01_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.5965 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set3 ens=003 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e003 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.5965 rm -f tmp.5965 if ( 003 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfbdy_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e003 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.5965 rm -f tmp.5965 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e003 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e003 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e003; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 4 -le 10 ]] + IENS=4 + export IENS + [[ 4 -lt 100 ]] + IENS=04 + export IENS + [[ 4 -lt 10 ]] + IENS=004 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e004 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e004 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 mozbc.ic.inp.set4a + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4a + echo + 1> tmp.txt + cat mozbc.ic.inp.set4a tmp.txt + 1> mozbc.ic.inp.set4 + rm -f mozbc.bc.inp.set4 mozbc.bc.inp.set4a + cat mozbc.bc.inp set4 + 1> mozbc.bc.inp.set4a + echo + 1> tmp.txt + cat mozbc.bc.inp.set4a tmp.txt + 1> mozbc.bc.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6048 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e004 ls -1 wrfinput_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6048 rm -f tmp.6048 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfinput_d01_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e004 set files = ( wrfinput_d01_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6115 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set4 ens=004 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e004 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6115 rm -f tmp.6115 if ( 004 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfbdy_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e004 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.6115 rm -f tmp.6115 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e004 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e004 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e004; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 5 -le 10 ]] + IENS=5 + export IENS + [[ 5 -lt 100 ]] + IENS=05 + export IENS + [[ 5 -lt 10 ]] + IENS=005 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e005 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e005 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 mozbc.ic.inp.set5a + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5a + echo + 1> tmp.txt + cat mozbc.ic.inp.set5a tmp.txt + 1> mozbc.ic.inp.set5 + rm -f mozbc.bc.inp.set5 mozbc.bc.inp.set5a + cat mozbc.bc.inp set5 + 1> mozbc.bc.inp.set5a + echo + 1> tmp.txt + cat mozbc.bc.inp.set5a tmp.txt + 1> mozbc.bc.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6197 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e005 ls -1 wrfinput_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6197 rm -f tmp.6197 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfinput_d01_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e005 set files = ( wrfinput_d01_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6265 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set5 ens=005 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e005 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6265 rm -f tmp.6265 if ( 005 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfbdy_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e005 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.6265 rm -f tmp.6265 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e005 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e005 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e005; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 6 -le 10 ]] + IENS=6 + export IENS + [[ 6 -lt 100 ]] + IENS=06 + export IENS + [[ 6 -lt 10 ]] + IENS=006 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e006 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e006 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 mozbc.ic.inp.set6a + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6a + echo + 1> tmp.txt + cat mozbc.ic.inp.set6a tmp.txt + 1> mozbc.ic.inp.set6 + rm -f mozbc.bc.inp.set6 mozbc.bc.inp.set6a + cat mozbc.bc.inp set6 + 1> mozbc.bc.inp.set6a + echo + 1> tmp.txt + cat mozbc.bc.inp.set6a tmp.txt + 1> mozbc.bc.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6347 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e006 ls -1 wrfinput_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6347 rm -f tmp.6347 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfinput_d01_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e006 set files = ( wrfinput_d01_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6415 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set6 ens=006 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e006 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6415 rm -f tmp.6415 if ( 006 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfbdy_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e006 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.6415 rm -f tmp.6415 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e006 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e006 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e006; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 7 -le 10 ]] + IENS=7 + export IENS + [[ 7 -lt 100 ]] + IENS=07 + export IENS + [[ 7 -lt 10 ]] + IENS=007 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e007 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e007 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 mozbc.ic.inp.set7a + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7a + echo + 1> tmp.txt + cat mozbc.ic.inp.set7a tmp.txt + 1> mozbc.ic.inp.set7 + rm -f mozbc.bc.inp.set7 mozbc.bc.inp.set7a + cat mozbc.bc.inp set7 + 1> mozbc.bc.inp.set7a + echo + 1> tmp.txt + cat mozbc.bc.inp.set7a tmp.txt + 1> mozbc.bc.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6501 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e007 ls -1 wrfinput_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.6501 rm -f tmp.6501 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfinput_d01_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e007 set files = ( wrfinput_d01_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6569 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set7 ens=007 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e007 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.6569 rm -f tmp.6569 if ( 007 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfbdy_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e007 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.6569 rm -f tmp.6569 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e007 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e007 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e007; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 8 -le 10 ]] + IENS=8 + export IENS + [[ 8 -lt 100 ]] + IENS=08 + export IENS + [[ 8 -lt 10 ]] + IENS=008 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e008 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e008 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 mozbc.ic.inp.set8a + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8a + echo + 1> tmp.txt + cat mozbc.ic.inp.set8a tmp.txt + 1> mozbc.ic.inp.set8 + rm -f mozbc.bc.inp.set8 mozbc.bc.inp.set8a + cat mozbc.bc.inp set8 + 1> mozbc.bc.inp.set8a + echo + 1> tmp.txt + cat mozbc.bc.inp.set8a tmp.txt + 1> mozbc.bc.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6651 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e008 ls -1 wrfinput_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.6651 rm -f tmp.6651 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfinput_d01_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e008 set files = ( wrfinput_d01_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6719 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set8 ens=008 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e008 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.6719 rm -f tmp.6719 if ( 008 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfbdy_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e008 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.6719 rm -f tmp.6719 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e008 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e008 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e008; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 9 -le 10 ]] + IENS=9 + export IENS + [[ 9 -lt 100 ]] + IENS=09 + export IENS + [[ 9 -lt 10 ]] + IENS=009 + export IENS + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e009 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e009 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 mozbc.ic.inp.set9a + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9a + echo + 1> tmp.txt + cat mozbc.ic.inp.set9a tmp.txt + 1> mozbc.ic.inp.set9 + rm -f mozbc.bc.inp.set9 mozbc.bc.inp.set9a + cat mozbc.bc.inp set9 + 1> mozbc.bc.inp.set9a + echo + 1> tmp.txt + cat mozbc.bc.inp.set9a tmp.txt + 1> mozbc.bc.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6802 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e009 ls -1 wrfinput_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.6802 rm -f tmp.6802 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfinput_d01_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e009 set files = ( wrfinput_d01_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6870 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set9 ens=009 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e009 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.6870 rm -f tmp.6870 if ( 009 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfbdy_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e009 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.6870 rm -f tmp.6870 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e009 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e009 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e009; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 10 -le 10 ]] + IENS=10 + export IENS + [[ 10 -lt 100 ]] + IENS=010 + export IENS + [[ 10 -lt 10 ]] + WRFINP=wrfinput_d01_2015-06-10_05:00:00.e010 + export WRFINP + WRFBDY=wrfbdy_d01_2015-06-10_05:00:00.e010 + export WRFBDY + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 mozbc.ic.inp.set10a + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10a + echo + 1> tmp.txt + cat mozbc.ic.inp.set10a tmp.txt + 1> mozbc.ic.inp.set10 + rm -f mozbc.bc.inp.set10 mozbc.bc.inp.set10a + cat mozbc.bc.inp set10 + 1> mozbc.bc.inp.set10a + echo + 1> tmp.txt + cat mozbc.bc.inp.set10a tmp.txt + 1> mozbc.bc.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_CR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.6952 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d01 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d01_*_*.e010 ls -1 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.6952 rm -f tmp.6952 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d01_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfinput_d01_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d01_2015-06-10_05:00:00.e010 set files = ( wrfinput_d01_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( IC == BC ) then if ( -e wrfbdy_d01 ) then foreach file ( wrfinput_d01_2015-06-10_05:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfinput_d01_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + ./run_mozbc_rt_CR.csh type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_CR.csh set prog = run_mozbc_rt_CR.csh set tmp_flsp = tmp.7021 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=bc mozbc_inp=mozbc.bc.inp.set10 ens=010 foreach argument ( TYPE=BC MOZBC_INP=MOZBC.BC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=BC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=BC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=BC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=bc set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo bc if ( BC != IC && BC != BC && BC != BOTH ) then echo if ( BC != BOTH ) then echo Bndy type = BC Bndy type = BC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.BC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.bc.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.bc.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( BC == IC || BC == BOTH ) then set filestem = wrfbdy endif set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfbdy_*_*.e010 ls -1 wrfbdy_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7021 rm -f tmp.7021 if ( 010 == all || all == all || all == all ) then if ( wrfbdy_d01_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfbdy_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfbdy_d01_2015-06-10_05:00:00.e010 set files = ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( BC == BOTH ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) if ( BC == BC ) then ls -1 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7021 rm -f tmp.7021 if ( wrfinput_d01_2015-06-10_05:00:00 == No match. ) then else if ( BC == BOTH ) then end if ( -e wrfinput_d01 ) then if ( BC == BC ) then set inp_file = `ls wrfinput_d01_*` ls wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 echo wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e010 ln -s wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 if ( 0 ) then endif if ( -e wrfbdy_d01 ) then foreach file ( wrfbdy_d01_2015-06-10_05:00:00.e010 ) if ( BC == IC || BC == BOTH ) then ln -s wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01 if ( 0 ) then set bdy_file = wrfbdy_d01_2015-06-10_05:00:00.e010 endif set outfile = mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010 ) then if ( BC == IC || BC == BOTH ) then set msg = Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 endif echo Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfbdy_d01_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfbdy_d01_2015-06-10_05:00:00.e010; run_mozbc_rt_CR.csh terminating rm -f wrfbdy_d01 rm -f wrfinput_d01 exit -1 + echo 'put files' put files + echo OK OK + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 2 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d02.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_mr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_mr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_mr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150614 + ./runICBC_parent_rt_MR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export CHEMDIR + WRFINP_MR=wrfinput_d02_2015-06-10_05:00:00 + export WRFINP_MR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 ./. + mv wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02_2015-06-10_05:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7147 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e000 ls -1 wrfinput_d02_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7147 rm -f tmp.7147 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfinput_d02_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e000 set files = ( wrfinput_d02_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e000 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e000; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + mv wrfinput_d02_2015-06-10_05:00:00.e000 wrfinput_d02_2015-06-10_05:00:00 + ./runICBC_setN_rt_MR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7222 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e001 ls -1 wrfinput_d02_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.7222 rm -f tmp.7222 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfinput_d02_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e001 set files = ( wrfinput_d02_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e001 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e001; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7295 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e002 ls -1 wrfinput_d02_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.7295 rm -f tmp.7295 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfinput_d02_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e002 set files = ( wrfinput_d02_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e002 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e002; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7367 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e003 ls -1 wrfinput_d02_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.7367 rm -f tmp.7367 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfinput_d02_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e003 set files = ( wrfinput_d02_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e003 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e003; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7439 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e004 ls -1 wrfinput_d02_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.7439 rm -f tmp.7439 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfinput_d02_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e004 set files = ( wrfinput_d02_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e004 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e004; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7511 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e005 ls -1 wrfinput_d02_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.7511 rm -f tmp.7511 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfinput_d02_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e005 set files = ( wrfinput_d02_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e005 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e005; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7583 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e006 ls -1 wrfinput_d02_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.7583 rm -f tmp.7583 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfinput_d02_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e006 set files = ( wrfinput_d02_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e006 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e006; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7656 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e007 ls -1 wrfinput_d02_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.7656 rm -f tmp.7656 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfinput_d02_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e007 set files = ( wrfinput_d02_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e007 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e007; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7730 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e008 ls -1 wrfinput_d02_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.7730 rm -f tmp.7730 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfinput_d02_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e008 set files = ( wrfinput_d02_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e008 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e008; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7802 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e009 ls -1 wrfinput_d02_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.7802 rm -f tmp.7802 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfinput_d02_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e009 set files = ( wrfinput_d02_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e009 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e009; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d02_2015-06-10_05:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_MR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_MR.csh set prog = run_mozbc_rt_MR.csh set tmp_flsp = tmp.7874 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d02 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d02_*_*.e010 ls -1 wrfinput_d02_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.7874 rm -f tmp.7874 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d02_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfinput_d02_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d02_2015-06-10_05:00:00.e010 set files = ( wrfinput_d02_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d02 ) then if ( IC == BC ) then if ( -e wrfbdy_d02 ) then foreach file ( wrfinput_d02_2015-06-10_05:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d02_2015-06-10_05:00:00.e010 wrfinput_d02 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfinput_d02_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010; run_mozbc_rt_MR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d02_2015-06-10_05:00:00.e010; run_mozbc_rt_MR.csh terminating rm -f wrfbdy_d02 rm -f wrfinput_d02 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + rm -rf mozbc.ic.inp + cat + 0<< \EOF &control do_bc = .false. do_ic = .true. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.ic.inp + rm -rf mozbc.bc.inp + cat + 0<< \EOF &control do_bc = .true. do_ic = .false. domain = 3 dir_wrf = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/' dir_moz = '/home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/mozart_forecasts' fn_moz = '/h0005.nc' def_missing_var = .true. met_file_prefix = 'met_em' met_file_suffix = '.nc' met_file_separator = '.' EOF 1> mozbc.bc.inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-10_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-11_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_06:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_07:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_08:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_09:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_10:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_11:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_12:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_13:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_14:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_15:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_16:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_17:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_18:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_19:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_20:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_21:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_22:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-12_23:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_00:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_01:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_02:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_03:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_04:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_05:00:00.nc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/metgrid/met_em.d03.2015-06-13_06:00:00.nc ./. + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + RANDOM=31742 + JOBRND=479_icbc_pert_fr + export JOBRND + cat + 0<< \EOF #!/bin/ksh -aeux #SBATCH --job-name 479_icbc_pert_fr #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_icbc_pert_fr.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition batch # /usr/ebuild/software/Python/2.7.15-foss-2018b/bin/python APM_random.py 0.30 10 /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/ICBC_PERT /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda false export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150616 + ./runICBC_parent_rt_FR.ksh + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real + export METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export CHEMDIR + WRFINP_FR=wrfinput_d03_2015-06-10_05:00:00 + export WRFINP_FR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 ./. + mv wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03_2015-06-10_05:00:00.e000 + rm -f mozbc.ic.inp.set00 + cat mozbc.ic.inp set00 + 1> mozbc.ic.inp.set00 + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.7992 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set00 ens=000 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET00 ENS=000 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET00 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set00 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=000 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=000 if ( 000 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 000 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set00 ) then if ( 1 ) then foreach ndx ( 000 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 000 ) set file_list = if ( 000 == all ) then set ens_str = .e000 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e000 ls -1 wrfinput_d03_2015-06-10_05:00:00.e000 set line1 = `head -1 tmp.$$` head -1 tmp.7992 rm -f tmp.7992 if ( 000 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e000 == No match. ) then else set file_list = wrfinput_d03_*_*.e000 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e000 set files = ( wrfinput_d03_2015-06-10_05:00:00.e000 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e000 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e000 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e000 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e000 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e000 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e000 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e000; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + mv wrfinput_d03_2015-06-10_05:00:00.e000 wrfinput_d03_2015-06-10_05:00:00 + ./runICBC_setN_rt_FR.ksh + unalias ls + YEAR=2015 + export YEAR + MONTH=06 + export MONTH + DAY=10 + export DAY + HOUR=05 + export HOUR + IC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic + export IC_METDIR + BC_METDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc + export BC_METDIR + CHEMDIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export CHEMDIR + ((i = 1)) + (( i <= 10)) + [ 1 -lt 10 ] + IENS=001 + export IENS + [ 1 -lt 100 ] + [ 1 -ge 10 ] + [ 1 -lt 1000 ] + [ 1 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e001 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e001 ./. + ls set1 set1 + rm -f mozbc.ic.inp.set1 + cat mozbc.ic.inp set1 + 1> mozbc.ic.inp.set1 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8068 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set1 ens=001 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET1 ENS=001 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET1 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set1 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=001 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=001 if ( 001 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 001 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set1 ) then if ( 1 ) then foreach ndx ( 001 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 001 ) set file_list = if ( 001 == all ) then set ens_str = .e001 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e001 ls -1 wrfinput_d03_2015-06-10_05:00:00.e001 set line1 = `head -1 tmp.$$` head -1 tmp.8068 rm -f tmp.8068 if ( 001 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e001 == No match. ) then else set file_list = wrfinput_d03_*_*.e001 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e001 set files = ( wrfinput_d03_2015-06-10_05:00:00.e001 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e001 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e001 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e001 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e001 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e001 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e001 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e001; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 2 -lt 10 ] + IENS=002 + export IENS + [ 2 -lt 100 ] + [ 2 -ge 10 ] + [ 2 -lt 1000 ] + [ 2 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e002 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e002 ./. + ls set2 set2 + rm -f mozbc.ic.inp.set2 + cat mozbc.ic.inp set2 + 1> mozbc.ic.inp.set2 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8140 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set2 ens=002 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET2 ENS=002 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET2 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set2 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=002 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=002 if ( 002 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 002 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set2 ) then if ( 1 ) then foreach ndx ( 002 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 002 ) set file_list = if ( 002 == all ) then set ens_str = .e002 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e002 ls -1 wrfinput_d03_2015-06-10_05:00:00.e002 set line1 = `head -1 tmp.$$` head -1 tmp.8140 rm -f tmp.8140 if ( 002 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e002 == No match. ) then else set file_list = wrfinput_d03_*_*.e002 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e002 set files = ( wrfinput_d03_2015-06-10_05:00:00.e002 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e002 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e002 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e002 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e002 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e002 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e002 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e002; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 3 -lt 10 ] + IENS=003 + export IENS + [ 3 -lt 100 ] + [ 3 -ge 10 ] + [ 3 -lt 1000 ] + [ 3 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e003 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e003 ./. + ls set3 set3 + rm -f mozbc.ic.inp.set3 + cat mozbc.ic.inp set3 + 1> mozbc.ic.inp.set3 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8309 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set3 ens=003 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET3 ENS=003 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET3 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set3 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=003 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=003 if ( 003 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 003 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set3 ) then if ( 1 ) then foreach ndx ( 003 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 003 ) set file_list = if ( 003 == all ) then set ens_str = .e003 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e003 ls -1 wrfinput_d03_2015-06-10_05:00:00.e003 set line1 = `head -1 tmp.$$` head -1 tmp.8309 rm -f tmp.8309 if ( 003 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e003 == No match. ) then else set file_list = wrfinput_d03_*_*.e003 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e003 set files = ( wrfinput_d03_2015-06-10_05:00:00.e003 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e003 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e003 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e003 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e003 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e003 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e003 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e003; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 4 -lt 10 ] + IENS=004 + export IENS + [ 4 -lt 100 ] + [ 4 -ge 10 ] + [ 4 -lt 1000 ] + [ 4 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e004 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e004 ./. + ls set4 set4 + rm -f mozbc.ic.inp.set4 + cat mozbc.ic.inp set4 + 1> mozbc.ic.inp.set4 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8405 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set4 ens=004 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET4 ENS=004 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET4 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set4 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=004 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=004 if ( 004 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 004 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set4 ) then if ( 1 ) then foreach ndx ( 004 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 004 ) set file_list = if ( 004 == all ) then set ens_str = .e004 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e004 ls -1 wrfinput_d03_2015-06-10_05:00:00.e004 set line1 = `head -1 tmp.$$` head -1 tmp.8405 rm -f tmp.8405 if ( 004 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e004 == No match. ) then else set file_list = wrfinput_d03_*_*.e004 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e004 set files = ( wrfinput_d03_2015-06-10_05:00:00.e004 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e004 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e004 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e004 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e004 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e004 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e004 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e004; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 5 -lt 10 ] + IENS=005 + export IENS + [ 5 -lt 100 ] + [ 5 -ge 10 ] + [ 5 -lt 1000 ] + [ 5 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e005 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e005 ./. + ls set5 set5 + rm -f mozbc.ic.inp.set5 + cat mozbc.ic.inp set5 + 1> mozbc.ic.inp.set5 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8477 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set5 ens=005 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET5 ENS=005 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET5 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set5 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=005 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=005 if ( 005 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 005 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set5 ) then if ( 1 ) then foreach ndx ( 005 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 005 ) set file_list = if ( 005 == all ) then set ens_str = .e005 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e005 ls -1 wrfinput_d03_2015-06-10_05:00:00.e005 set line1 = `head -1 tmp.$$` head -1 tmp.8477 rm -f tmp.8477 if ( 005 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e005 == No match. ) then else set file_list = wrfinput_d03_*_*.e005 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e005 set files = ( wrfinput_d03_2015-06-10_05:00:00.e005 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e005 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e005 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e005 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e005 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e005 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e005 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e005; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 6 -lt 10 ] + IENS=006 + export IENS + [ 6 -lt 100 ] + [ 6 -ge 10 ] + [ 6 -lt 1000 ] + [ 6 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e006 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e006 ./. + ls set6 set6 + rm -f mozbc.ic.inp.set6 + cat mozbc.ic.inp set6 + 1> mozbc.ic.inp.set6 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8549 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set6 ens=006 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET6 ENS=006 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET6 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set6 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=006 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=006 if ( 006 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 006 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set6 ) then if ( 1 ) then foreach ndx ( 006 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 006 ) set file_list = if ( 006 == all ) then set ens_str = .e006 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e006 ls -1 wrfinput_d03_2015-06-10_05:00:00.e006 set line1 = `head -1 tmp.$$` head -1 tmp.8549 rm -f tmp.8549 if ( 006 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e006 == No match. ) then else set file_list = wrfinput_d03_*_*.e006 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e006 set files = ( wrfinput_d03_2015-06-10_05:00:00.e006 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e006 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e006 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e006 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e006 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e006 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e006 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e006; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 7 -lt 10 ] + IENS=007 + export IENS + [ 7 -lt 100 ] + [ 7 -ge 10 ] + [ 7 -lt 1000 ] + [ 7 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e007 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e007 ./. + ls set7 set7 + rm -f mozbc.ic.inp.set7 + cat mozbc.ic.inp set7 + 1> mozbc.ic.inp.set7 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8622 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set7 ens=007 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET7 ENS=007 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET7 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set7 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=007 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=007 if ( 007 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 007 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set7 ) then if ( 1 ) then foreach ndx ( 007 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 007 ) set file_list = if ( 007 == all ) then set ens_str = .e007 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e007 ls -1 wrfinput_d03_2015-06-10_05:00:00.e007 set line1 = `head -1 tmp.$$` head -1 tmp.8622 rm -f tmp.8622 if ( 007 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e007 == No match. ) then else set file_list = wrfinput_d03_*_*.e007 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e007 set files = ( wrfinput_d03_2015-06-10_05:00:00.e007 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e007 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e007 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e007 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e007 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e007 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e007 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e007; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 8 -lt 10 ] + IENS=008 + export IENS + [ 8 -lt 100 ] + [ 8 -ge 10 ] + [ 8 -lt 1000 ] + [ 8 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e008 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e008 ./. + ls set8 set8 + rm -f mozbc.ic.inp.set8 + cat mozbc.ic.inp set8 + 1> mozbc.ic.inp.set8 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8694 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set8 ens=008 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET8 ENS=008 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET8 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set8 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=008 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=008 if ( 008 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 008 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set8 ) then if ( 1 ) then foreach ndx ( 008 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 008 ) set file_list = if ( 008 == all ) then set ens_str = .e008 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e008 ls -1 wrfinput_d03_2015-06-10_05:00:00.e008 set line1 = `head -1 tmp.$$` head -1 tmp.8694 rm -f tmp.8694 if ( 008 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e008 == No match. ) then else set file_list = wrfinput_d03_*_*.e008 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e008 set files = ( wrfinput_d03_2015-06-10_05:00:00.e008 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e008 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e008 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e008 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e008 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e008 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e008 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e008; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 9 -lt 10 ] + IENS=009 + export IENS + [ 9 -lt 100 ] + [ 9 -ge 10 ] + [ 9 -lt 1000 ] + [ 9 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e009 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e009 ./. + ls set9 set9 + rm -f mozbc.ic.inp.set9 + cat mozbc.ic.inp set9 + 1> mozbc.ic.inp.set9 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8767 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set9 ens=009 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET9 ENS=009 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET9 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set9 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=009 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=009 if ( 009 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 009 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set9 ) then if ( 1 ) then foreach ndx ( 009 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 009 ) set file_list = if ( 009 == all ) then set ens_str = .e009 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e009 ls -1 wrfinput_d03_2015-06-10_05:00:00.e009 set line1 = `head -1 tmp.$$` head -1 tmp.8767 rm -f tmp.8767 if ( 009 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e009 == No match. ) then else set file_list = wrfinput_d03_*_*.e009 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e009 set files = ( wrfinput_d03_2015-06-10_05:00:00.e009 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e009 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e009 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e009 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e009 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e009 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e009 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e009; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + [ 10 -lt 10 ] + [ 10 -lt 100 ] + [ 10 -ge 10 ] + IENS=010 + export IENS + [ 10 -lt 1000 ] + [ 10 -ge 100 ] + WRFINP=wrfinput_d03_2015-06-10_05:00:00.e010 + export WRFINP + echo 'get inp' get inp + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e010 ./. + ls set10 set10 + rm -f mozbc.ic.inp.set10 + cat mozbc.ic.inp set10 + 1> mozbc.ic.inp.set10 + echo 'run mozbc' run mozbc + ./run_mozbc_rt_FR.csh type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 unalias ls set prog = ./run_mozbc_rt_FR.csh set prog = run_mozbc_rt_FR.csh set tmp_flsp = tmp.8839 set pwd = `pwd` pwd if ( 3 > 0 ) then set args1 = ( type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 ) set args = `echo $args1 | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo type=ic mozbc_inp=mozbc.ic.inp.set10 ens=010 foreach argument ( TYPE=IC MOZBC_INP=MOZBC.IC.INP.SET10 ENS=010 ) foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo TYPE=IC if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo TYPE=IC if ( ! 1 ) then continue set sarg = TYPE set sarg = TYPE= grep --color=auto TYPE= echo TYPE=IC if ( ! 0 ) then if ( TYPE == MOZBC_INP ) then if ( TYPE == TYPE ) then set bnd_typ = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo type=ic set bnd_typ = `echo $bnd_typ | tr '[a-z]' '[A-Z]'` tr [a-z] [A-Z] echo ic if ( IC != IC && IC != BC && IC != BOTH ) then echo if ( IC != BOTH ) then echo Bndy type = IC Bndy type = IC else else if ( TYPE == ENS ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 1 ) then continue set sarg = MOZBC_INP set sarg = MOZBC_INP= grep --color=auto MOZBC_INP= echo MOZBC_INP=MOZBC.IC.INP.SET10 if ( ! 0 ) then if ( MOZBC_INP == MOZBC_INP ) then set mozbc_inp = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo mozbc_inp=mozbc.ic.inp.set10 else if ( MOZBC_INP == TYPE ) then break shift args1 end foreach keyword ( ENS MOZBC_INP TYPE JULIAN_DAYS TOD ) set sarg = ENS set sarg = ENS= grep --color=auto ENS= echo ENS=010 if ( ! 0 ) then if ( ENS == MOZBC_INP ) then if ( ENS == TYPE ) then if ( ENS == ENS ) then set wrk = `echo $args1[1] | cut -d= -f2` cut -d= -f2 echo ens=010 if ( 010 != ) then set ens_id = `echo $wrk | sed 's/,/ /g'` sed s/,/ /g echo 010 endif else if ( ENS == TOD ) then break shift args1 end endif if ( ! -e mozbc.exe ) then if ( ! 1 ) then if ( ! 1 ) then if ( ! -e mozbc.ic.inp.set10 ) then if ( 1 ) then foreach ndx ( 010 ) if ( ! 1 ) then end else if ( 0 ) then set tod = all endif if ( 0 ) then set jd = all endif if ( IC == IC || IC == BOTH ) then set filestem = wrfinput_d03 else set files = foreach ensno ( 010 ) set file_list = if ( 010 == all ) then set ens_str = .e010 endif foreach td ( all ) if ( all == all ) then set td_str = _* else foreach julday ( all ) if ( all == all ) then set jd_str = _* else set add_list = wrfinput_d03_*_*.e010 ls -1 wrfinput_d03_2015-06-10_05:00:00.e010 set line1 = `head -1 tmp.$$` head -1 tmp.8839 rm -f tmp.8839 if ( 010 == all || all == all || all == all ) then if ( wrfinput_d03_2015-06-10_05:00:00.e010 == No match. ) then else set file_list = wrfinput_d03_*_*.e010 end end set new_files = `ls -1 $file_list` ls -1 wrfinput_d03_2015-06-10_05:00:00.e010 set files = ( wrfinput_d03_2015-06-10_05:00:00.e010 ) end set file_cnt = 1 if ( IC == BOTH ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e010 ) if ( IC == BC ) then if ( IC == BOTH ) then end if ( -e wrfinput_d03 ) then if ( IC == BC ) then if ( -e wrfbdy_d03 ) then foreach file ( wrfinput_d03_2015-06-10_05:00:00.e010 ) if ( IC == IC || IC == BOTH ) then ln -s wrfinput_d03_2015-06-10_05:00:00.e010 wrfinput_d03 if ( 0 ) then if ( IC == BOTH ) then else set outfile = mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010 if ( -e mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010 ) then if ( IC == IC || IC == BOTH ) then set msg = Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e010 if ( IC == BOTH ) then else echo Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e010 Running mozbc.exe for file wrfinput_d03_2015-06-10_05:00:00.e010 if ( -e run_mozbc_done ) then ./mozbc.exe if ( ! -e run_mozbc_done ) then echo There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010; run_mozbc_rt_FR.csh terminating There was an error running mozbc.exe, check file mozbc.out.wrfinput_d03_2015-06-10_05:00:00.e010; run_mozbc_rt_FR.csh terminating rm -f wrfbdy_d03 rm -f wrfinput_d03 exit -1 + echo 'put files' put files + echo OK OK + ((i += 1)) + (( i <= 10)) + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01_2015-06-10_05:00:00 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfbdy_d01_2015-06-10_05:00:00 wrfbdy_d01_2015-06-10_05:00:00 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02_2015-06-10_05:00:00 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/real/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03_2015-06-10_05:00:00 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e001 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e001 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01_2015-06-10_05:00:00.e001 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01_2015-06-10_05:00:00.e001 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e001 wrfinput_d02_2015-06-10_05:00:00.e001 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e001 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e001 wrfinput_d03_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e002 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e002 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01_2015-06-10_05:00:00.e002 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01_2015-06-10_05:00:00.e002 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e002 wrfinput_d02_2015-06-10_05:00:00.e002 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e002 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e002 wrfinput_d03_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e003 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e003 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01_2015-06-10_05:00:00.e003 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01_2015-06-10_05:00:00.e003 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e003 wrfinput_d02_2015-06-10_05:00:00.e003 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e003 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e003 wrfinput_d03_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e004 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e004 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01_2015-06-10_05:00:00.e004 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01_2015-06-10_05:00:00.e004 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e004 wrfinput_d02_2015-06-10_05:00:00.e004 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e004 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e004 wrfinput_d03_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e005 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e005 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01_2015-06-10_05:00:00.e005 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01_2015-06-10_05:00:00.e005 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e005 wrfinput_d02_2015-06-10_05:00:00.e005 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e005 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e005 wrfinput_d03_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e006 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e006 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01_2015-06-10_05:00:00.e006 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01_2015-06-10_05:00:00.e006 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e006 wrfinput_d02_2015-06-10_05:00:00.e006 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e006 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e006 wrfinput_d03_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e007 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e007 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01_2015-06-10_05:00:00.e007 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01_2015-06-10_05:00:00.e007 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e007 wrfinput_d02_2015-06-10_05:00:00.e007 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e007 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e007 wrfinput_d03_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e008 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e008 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01_2015-06-10_05:00:00.e008 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01_2015-06-10_05:00:00.e008 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e008 wrfinput_d02_2015-06-10_05:00:00.e008 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e008 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e008 wrfinput_d03_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e009 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e009 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01_2015-06-10_05:00:00.e009 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01_2015-06-10_05:00:00.e009 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e009 wrfinput_d02_2015-06-10_05:00:00.e009 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e009 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e009 wrfinput_d03_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + WRFINPEN=wrfinput_d01_2015-06-10_05:00:00.e010 + export WRFINPEN + WRFBDYEN=wrfbdy_d01_2015-06-10_05:00:00.e010 + export WRFBDYEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01_2015-06-10_05:00:00.e010 + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_bc/wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01_2015-06-10_05:00:00.e010 + WRFINPEN=wrfinput_d02_2015-06-10_05:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d02_2015-06-10_05:00:00.e010 wrfinput_d02_2015-06-10_05:00:00.e010 + WRFINPEN=wrfinput_d03_2015-06-10_05:00:00.e010 + export WRFINPEN + ncks -A /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_met_ic/wrfinput_d03_2015-06-10_05:00:00.e010 wrfinput_d03_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss + EMISS_FREQ=1 + export EMISS_FREQ + NL_SPREAD_CHEMI=0.30 + export NL_SPREAD_CHEMI + NL_SPREAD_FIRE=0.00 + export NL_SPREAD_FIRE + NL_SPREAD_BIOG=0.00 + export NL_SPREAD_BIOG + NL_CORR_HALF_WIDTH=800. + export NL_CORR_HALF_WIDTH + [[ -e perturb_chem_emiss_CORR_RT_CONST.exe ]] + cp /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/run_scripts/RUN_PERT_CHEM/EMISS_PERT/work/perturb_chem_emiss_CORR_RT_CONST.exe ./. + L_DATE=2015061005 + export L_DATE + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + LE_DATE=2015061006 + export LE_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061005 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061005 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061005 + L_HH=05 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_05:00:00 wrfchemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_05:00:00 wrffirechemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_05:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_05:00:00 wrfbiochemi_d01_2015-06-10_05:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=9336 + [[ -f job.ksh ]] + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_25068.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150626 + WRFCHEMI=wrfchemi_d02_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_05:00:00 wrfchemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_05:00:00 wrffirechemi_d02_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_05:00:00 wrfbiochemi_d02_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=11752 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22064.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150638 + WRFCHEMI=wrfchemi_d03_2015-06-10_05:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_05:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_05:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_05:00:00 wrfchemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_05:00:00 wrffirechemi_d03_2015-06-10_05:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_05:00:00 wrfbiochemi_d03_2015-06-10_05:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_05:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_05:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_05:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12318 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_17643.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150641 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YYYY=2015 + export L_YYYY + cut -c5-6 + echo 2015061006 + L_MM=06 + export L_MM + cut -c7-8 + echo 2015061006 + L_DD=10 + export L_DD + cut -c9-10 + echo 2015061006 + L_HH=06 + export L_HH + NL_PERT_CHEM=true + export NL_PERT_CHEM + NL_PERT_FIRE=false + export NL_PERT_FIRE + NL_PERT_BIO=false + export NL_PERT_BIO + NL_SW_GENERATE=false + export NL_SW_GENERATE + [[ 2015061005 -eq 2015061000 ]] + WRFCHEMI=wrfchemi_d01_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d01_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d01_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d01_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00 wrfinput_d01 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e001 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e001 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e002 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e002 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e003 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e003 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e004 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e004 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e005 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e005 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e006 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e006 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e007 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e007 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e008 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e008 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e009 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e009 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + rm -rf wrfchemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d01_2015-06-10_06:00:00 wrfchemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_CO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,E_NO,c,c,XLONG, XLAT' wrfchemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrffirechemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d01_2015-06-10_06:00:00 wrffirechemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_co,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_no,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_oc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_bc,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_c2h4,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch2o,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + ncatted -O -a 'coordinates,ebu_in_ch3oh,c,c,XLONG, XLAT' wrffirechemi_d01_2015-06-10_06:00:00.e010 + rm -rf wrfbiochemi_d01_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d01_2015-06-10_06:00:00 wrfbiochemi_d01_2015-06-10_06:00:00.e010 + chmod a+rwx wrfchemi_d01_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=195, ny=167, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d01', wrfchemi='wrfchemi_d01_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d01_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d01_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_cr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_cr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_cr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12631 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_cr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_cr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_22378.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150644 + WRFCHEMI=wrfchemi_d02_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d02_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d02_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d02_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00 wrfinput_d02 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d02_2015-06-10_06:00:00 wrfchemi_d02_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d02_2015-06-10_06:00:00 wrffirechemi_d02_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d02_2015-06-10_06:00:00 wrfbiochemi_d02_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=255, ny=228, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d02', wrfchemi='wrfchemi_d02_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d02_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d02_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_mr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_mr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_mr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=12893 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_mr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_mr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_4979.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150647 + WRFCHEMI=wrfchemi_d03_2015-06-10_06:00:00 + export WRFCHEMI + WRFFIRECHEMI=wrffirechemi_d03_2015-06-10_06:00:00 + export WRFFIRECHEMI + WRFBIOCHEMI=wrfbiochemi_d03_2015-06-10_06:00:00 + export WRFBIOCHEMI + WRFINPUT=wrfinput_d03_2015-06-10_05:00:00 + export WRFINPUT + WRFINPUT_DIR=/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc + export WRFINPUT_DIR + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00 wrfinput_d03 + let MEM=1 + [[ 1 -le 10 ]] + CMEM=e1 + export CMEM + [[ 1 -lt 100 ]] + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + CMEM=e001 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e001 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e001 + let MEM=MEM+1 + [[ 2 -le 10 ]] + CMEM=e2 + export CMEM + [[ 2 -lt 100 ]] + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + CMEM=e002 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e002 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e002 + let MEM=MEM+1 + [[ 3 -le 10 ]] + CMEM=e3 + export CMEM + [[ 3 -lt 100 ]] + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + CMEM=e003 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e003 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e003 + let MEM=MEM+1 + [[ 4 -le 10 ]] + CMEM=e4 + export CMEM + [[ 4 -lt 100 ]] + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + CMEM=e004 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e004 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e004 + let MEM=MEM+1 + [[ 5 -le 10 ]] + CMEM=e5 + export CMEM + [[ 5 -lt 100 ]] + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + CMEM=e005 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e005 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e005 + let MEM=MEM+1 + [[ 6 -le 10 ]] + CMEM=e6 + export CMEM + [[ 6 -lt 100 ]] + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + CMEM=e006 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e006 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e006 + let MEM=MEM+1 + [[ 7 -le 10 ]] + CMEM=e7 + export CMEM + [[ 7 -lt 100 ]] + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + CMEM=e007 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e007 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e007 + let MEM=MEM+1 + [[ 8 -le 10 ]] + CMEM=e8 + export CMEM + [[ 8 -lt 100 ]] + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + CMEM=e008 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e008 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e008 + let MEM=MEM+1 + [[ 9 -le 10 ]] + CMEM=e9 + export CMEM + [[ 9 -lt 100 ]] + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + CMEM=e009 + export CMEM + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e009 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e009 + let MEM=MEM+1 + [[ 10 -le 10 ]] + CMEM=e10 + export CMEM + [[ 10 -lt 100 ]] + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chemi/wrfchemi_d03_2015-06-10_06:00:00 wrfchemi_d03_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_fire/wrffirechemi_d03_2015-06-10_06:00:00 wrffirechemi_d03_2015-06-10_06:00:00.e010 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_bio/wrfbiochemi_d03_2015-06-10_06:00:00 wrfbiochemi_d03_2015-06-10_06:00:00.e010 + let MEM=MEM+1 + [[ 11 -le 10 ]] + CREATE NAMELIST ./real_time_CAFIRE_RETR_taki_tolnet_radm2_wps_1hour_3d_noda.ksh[2843]: CREATE: not found [No such file or directory] + rm -rf perturb_chem_emiss_CORR_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_CORR_nml nx=258, ny=204, nz=36, nz_chem=19, nchem_spc=37, nfire_spc=31, nbio_spc=1, pert_path='/home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda', nnum_mem=10, wrfinput='wrfinput_d03', wrfchemi='wrfchemi_d03_2015-06-10_06:00:00', wrffirechemi='wrffirechemi_d03_2015-06-10_06:00:00', wrfbiochemi='wrfbiochemi_d03_2015-06-10_06:00:00', sprd_chem=0.30, sprd_fire=0.00, sprd_biog=0.00, sw_gen=false, sw_chem=true, sw_fire=false, sw_biog=false, / EOF 1> perturb_chem_emiss_CORR_nml.nl + rm -rf perturb_emiss_chem_spec_nml.nl + cat + 0<< \EOF &perturb_chem_emiss_spec_nml ch_chem_spc='E_ISO','E_SO2','E_NO','E_NO2','E_CO','E_ETH','E_HC3','E_HC5','E_HC8','E_XYL','E_OL2','E_OLT','E_OLI','E_TOL','E_CSL','E_HCHO','E_ALD','E_KET','E_ORA2','E_NH3','E_PM25I','E_PM25J','E_PM_10','E_ECI','E_ECJ','E_ORGI','E_ORGJ','E_SO4I','E_SO4J','E_NO3I','E_NO3J','E_NAAJ','E_NAAI','E_ORGI_A','E_ORGJ_A','E_ORGI_BB','E_ORGI_BB', ch_fire_spc='ebu_in_co','ebu_in_no','ebu_in_so2','ebu_in_bigalk','ebu_in_bigene','ebu_in_c2h4','ebu_in_c2h5oh','ebu_in_c2h6','ebu_in_c3h8','ebu_in_c3h6','ebu_in_ch2o','ebu_in_ch3cho','ebu_in_ch3coch3','ebu_in_ch3oh','ebu_in_mek','ebu_in_toluene','ebu_in_nh3','ebu_in_no2','ebu_in_open','ebu_in_c10h16','ebu_in_ch3cooh','ebu_in_cres','ebu_in_glyald','ebu_in_mgly','ebu_in_gly','ebu_in_acetol','ebu_in_isop','ebu_in_macr','ebu_in_mvk','ebu_in_oc','ebu_in_bc', ch_bio_spc='MSEBIO_ISOP', / EOF 1> perturb_emiss_chem_spec_nml.nl + RANDOM=31742 + JOBRND=479_fr_emiss_pert + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 479_fr_emiss_pert normal+ 01:40:00 1 1 perturb_chem_emiss_CORR_RT_CONST.exe SERIAL + JOBID=479_fr_emiss_pert + export JOBID + CLASS=normal+ + export CLASS + TIME_LIMIT=01:40:00 + export TIME_LIMIT + NODES=1 + export NODES + TASKS=1 + export TASKS + EXECUTE=perturb_chem_emiss_CORR_RT_CONST.exe + export EXECUTE + TYPE=SERIAL + export TYPE + RANDOM=13177 + [[ -f job.ksh ]] + rm -rf job.ksh + touch job.ksh + [[ SERIAL == PARALLEL ]] + [[ SERIAL == SERIAL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 479_fr_emiss_pert #SBATCH --qos normal+ #SBATCH --time 01:40:00 #SBATCH --output 479_fr_emiss_pert.log-%j.out #SBATCH --nodes 1 #SBATCH --ntasks 1 #SBATCH --partition high_mem #SBATCH --mem=max ./perturb_chem_emiss_CORR_RT_CONST.exe > index_963.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch -W job.ksh Submitted batch job 1150649 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + rm -rf 'wrfchemi_d01_tmp*' + rm -rf 'wrfchemi_d02_tmp*' + rm -rf 'wrfchemi_d03_tmp*' + ncecat -n 10,3,1 wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_tmp1 + ncecat -n 10,3,1 wrfchemi_d02_2015-06-10_05:00:00.e001 wrfchemi_d02_tmp1 + ncecat -n 10,3,1 wrfchemi_d03_2015-06-10_05:00:00.e001 wrfchemi_d03_tmp1 + ncwa -O -a record wrfchemi_d01_tmp1 wrfchemi_d01_mean + ncwa -O -a record wrfchemi_d02_tmp1 wrfchemi_d02_mean + ncwa -O -a record wrfchemi_d03_tmp1 wrfchemi_d03_mean + ncbo '--op_typ=-' wrfchemi_d01_tmp1 wrfchemi_d01_mean wrfchemi_d01_tmp3 + ncbo '--op_typ=-' wrfchemi_d02_tmp1 wrfchemi_d02_mean wrfchemi_d02_tmp3 + ncbo '--op_typ=-' wrfchemi_d03_tmp1 wrfchemi_d03_mean wrfchemi_d03_tmp3 + ncra -O -y rmssdn wrfchemi_d01_tmp3 wrfchemi_d01_sprd + ncra -O -y rmssdn wrfchemi_d02_tmp3 wrfchemi_d02_sprd + ncra -O -y rmssdn wrfchemi_d03_tmp3 wrfchemi_d03_sprd + rm -rf wrfchemi_d01_tmp1 wrfchemi_d01_tmp3 + rm -rf wrfchemi_d02_tmp1 wrfchemi_d02_tmp3 + rm -rf wrfchemi_d03_tmp1 wrfchemi_d03_tmp3 + false + false + false + false + false + true + [[ ! -d /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial ]] + mkdir -p /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + TRANDOM=31742 + let IMEM=1 + L_NUM_MEMBERS=10 + export L_NUM_MEMBERS + false + [[ 1 -le 10 ]] + MEM=1 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e1 + export CMEM + KMEM=1 + export KMEM + [[ 1 -lt 1000 ]] + KMEM=01 + export KMEM + [[ 1 -lt 100 ]] + KMEM=001 + export KMEM + CMEM=e01 + export CMEM + [[ 1 -lt 10 ]] + KMEM=0001 + export KMEM + CMEM=e001 + export CMEM + L_RUN_DIR=run_e001 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e001 ]] + mkdir run_e001 + cd run_e001 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e001 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e001 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e001 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e001 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e001 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e001 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e001 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e001 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e001 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e001 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e001 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e001 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e001 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e001 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e001 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e001 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e001 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e001 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e001 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e001 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e001 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e001 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14602 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24681.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150664 + let IMEM=1+1 + [[ 2 -le 10 ]] + MEM=2 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e2 + export CMEM + KMEM=2 + export KMEM + [[ 2 -lt 1000 ]] + KMEM=02 + export KMEM + [[ 2 -lt 100 ]] + KMEM=002 + export KMEM + CMEM=e02 + export CMEM + [[ 2 -lt 10 ]] + KMEM=0002 + export KMEM + CMEM=e002 + export CMEM + L_RUN_DIR=run_e002 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e002 ]] + mkdir run_e002 + cd run_e002 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e002 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e002 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e002 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e002 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e002 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e002 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e002 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e002 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e002 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e002 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e002 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e002 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e002 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e002 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e002 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e002 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e002 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e002 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e002 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e002 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e002 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e002 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14721 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_12489.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150665 + let IMEM=2+1 + [[ 3 -le 10 ]] + MEM=3 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e3 + export CMEM + KMEM=3 + export KMEM + [[ 3 -lt 1000 ]] + KMEM=03 + export KMEM + [[ 3 -lt 100 ]] + KMEM=003 + export KMEM + CMEM=e03 + export CMEM + [[ 3 -lt 10 ]] + KMEM=0003 + export KMEM + CMEM=e003 + export CMEM + L_RUN_DIR=run_e003 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e003 ]] + mkdir run_e003 + cd run_e003 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e003 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e003 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e003 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e003 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e003 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e003 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e003 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e003 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e003 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e003 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e003 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e003 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e003 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e003 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e003 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e003 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e003 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e003 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e003 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e003 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e003 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e003 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14840 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_21530.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150666 + let IMEM=3+1 + [[ 4 -le 10 ]] + MEM=4 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e4 + export CMEM + KMEM=4 + export KMEM + [[ 4 -lt 1000 ]] + KMEM=04 + export KMEM + [[ 4 -lt 100 ]] + KMEM=004 + export KMEM + CMEM=e04 + export CMEM + [[ 4 -lt 10 ]] + KMEM=0004 + export KMEM + CMEM=e004 + export CMEM + L_RUN_DIR=run_e004 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e004 ]] + mkdir run_e004 + cd run_e004 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e004 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e004 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e004 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e004 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e004 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e004 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e004 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e004 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e004 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e004 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e004 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e004 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e004 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e004 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e004 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e004 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e004 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e004 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e004 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e004 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e004 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e004 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=14960 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_31118.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150667 + let IMEM=4+1 + [[ 5 -le 10 ]] + MEM=5 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e5 + export CMEM + KMEM=5 + export KMEM + [[ 5 -lt 1000 ]] + KMEM=05 + export KMEM + [[ 5 -lt 100 ]] + KMEM=005 + export KMEM + CMEM=e05 + export CMEM + [[ 5 -lt 10 ]] + KMEM=0005 + export KMEM + CMEM=e005 + export CMEM + L_RUN_DIR=run_e005 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e005 ]] + mkdir run_e005 + cd run_e005 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e005 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e005 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e005 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e005 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e005 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e005 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e005 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e005 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e005 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e005 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e005 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e005 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e005 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e005 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e005 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e005 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e005 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e005 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e005 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e005 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e005 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e005 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15082 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_6325.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150668 + let IMEM=5+1 + [[ 6 -le 10 ]] + MEM=6 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e6 + export CMEM + KMEM=6 + export KMEM + [[ 6 -lt 1000 ]] + KMEM=06 + export KMEM + [[ 6 -lt 100 ]] + KMEM=006 + export KMEM + CMEM=e06 + export CMEM + [[ 6 -lt 10 ]] + KMEM=0006 + export KMEM + CMEM=e006 + export CMEM + L_RUN_DIR=run_e006 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e006 ]] + mkdir run_e006 + cd run_e006 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e006 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e006 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e006 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e006 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e006 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e006 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e006 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e006 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e006 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e006 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e006 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e006 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e006 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e006 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e006 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e006 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e006 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e006 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e006 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e006 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e006 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e006 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15200 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_24502.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150669 + let IMEM=6+1 + [[ 7 -le 10 ]] + MEM=7 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e7 + export CMEM + KMEM=7 + export KMEM + [[ 7 -lt 1000 ]] + KMEM=07 + export KMEM + [[ 7 -lt 100 ]] + KMEM=007 + export KMEM + CMEM=e07 + export CMEM + [[ 7 -lt 10 ]] + KMEM=0007 + export KMEM + CMEM=e007 + export CMEM + L_RUN_DIR=run_e007 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e007 ]] + mkdir run_e007 + cd run_e007 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e007 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e007 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e007 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e007 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e007 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e007 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e007 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e007 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e007 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e007 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e007 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e007 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e007 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e007 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e007 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e007 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e007 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e007 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e007 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e007 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e007 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e007 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15322 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_15978.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150670 + let IMEM=7+1 + [[ 8 -le 10 ]] + MEM=8 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e8 + export CMEM + KMEM=8 + export KMEM + [[ 8 -lt 1000 ]] + KMEM=08 + export KMEM + [[ 8 -lt 100 ]] + KMEM=008 + export KMEM + CMEM=e08 + export CMEM + [[ 8 -lt 10 ]] + KMEM=0008 + export KMEM + CMEM=e008 + export CMEM + L_RUN_DIR=run_e008 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e008 ]] + mkdir run_e008 + cd run_e008 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e008 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e008 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e008 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e008 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e008 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e008 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e008 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e008 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e008 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e008 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e008 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e008 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e008 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e008 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e008 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e008 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e008 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e008 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e008 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e008 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e008 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e008 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15440 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_2784.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150671 + let IMEM=8+1 + [[ 9 -le 10 ]] + MEM=9 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e9 + export CMEM + KMEM=9 + export KMEM + [[ 9 -lt 1000 ]] + KMEM=09 + export KMEM + [[ 9 -lt 100 ]] + KMEM=009 + export KMEM + CMEM=e09 + export CMEM + [[ 9 -lt 10 ]] + KMEM=0009 + export KMEM + CMEM=e009 + export CMEM + L_RUN_DIR=run_e009 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e009 ]] + mkdir run_e009 + cd run_e009 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e009 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e009 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e009 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e009 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e009 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e009 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e009 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e009 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e009 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e009 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e009 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e009 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e009 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e009 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e009 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e009 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e009 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e009 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e009 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e009 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e009 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e009 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15562 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_5340.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150672 + let IMEM=9+1 + [[ 10 -le 10 ]] + MEM=10 + export MEM + NL_TIME_STEP=60 + export NL_TIME_STEP + false + CMEM=e10 + export CMEM + KMEM=10 + export KMEM + [[ 10 -lt 1000 ]] + KMEM=010 + export KMEM + [[ 10 -lt 100 ]] + KMEM=0010 + export KMEM + CMEM=e010 + export CMEM + [[ 10 -lt 10 ]] + L_RUN_DIR=run_e010 + export L_RUN_DIR + cd /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_initial + false + [[ ! -e run_e010 ]] + mkdir run_e010 + cd run_e010 + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/wrf.exe ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_lon.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/aerosol_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkdens.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/bulkradii.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_ABS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAM_AEROPT_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A1B ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.A2 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP4.5 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CAMtr_volume_mixing_ratio.RCP6 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/capacity.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CCN_ACTIVATE.BIN ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ALB_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_ASM_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_DRDSDT0_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DFS_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_EXT_ICE_DRC_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_KAPPA_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/CLM_TAU_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_p.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/coeff_q.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/constants.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ETAMPNEW_DATA.expanded_rain ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/GENPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/grib2map.tbl ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/gribmap.txt ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels.asc_s_0_03_0_9 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/kernels_z.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/LANDUSE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/masses.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/MPTABLE.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_lat.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/ozone_plev.formatted ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTM_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_LW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/RRTMG_SW_DATA ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/SOILPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/termvels.asc ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t67 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr49t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/tr67t85 ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/URBPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_ma/WRFV3/test/em_real/VEGPARM.TBL ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v1 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v2 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/hist_io_files/hist_io_flds_v3 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/clim_p_trop.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/CAFIRE_REAL_TIME_DATA/static_files/ubvals_b40.20th.track1_1996-2005.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d01 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d02 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/exo_coldens/exo_coldens_d03 ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d01.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d02.nc ./. + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/seasons_wes/wrf_season_wes_usgs_d03.nc ./. + L_DATE=2015061005 + export L_DATE + [[ 2015061005 -le 2015061006 ]] + echo 2015061005 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061005 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061005 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061005 + cut -c9-10 + L_HH=05 + export L_HH + L_FILE_DATE=2015-06-10_05:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_05:00:00.e010 wrfbiochemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_05:00:00.e010 wrfbiochemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_05:00:00.e010 wrfbiochemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_05:00:00.e010 wrffirechemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_05:00:00.e010 wrffirechemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_05:00:00.e010 wrffirechemi_d03_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_05:00:00.e010 wrfchemi_d01_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_05:00:00.e010 wrfchemi_d02_2015-06-10_05:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_05:00:00.e010 wrfchemi_d03_2015-06-10_05:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061005 +1 + 2> /dev/null + L_DATE=2015061006 + export L_DATE + [[ 2015061006 -le 2015061006 ]] + echo 2015061006 + cut -c1-4 + L_YY=2015 + export L_YY + echo 2015061006 + cut -c5-6 + L_MM=06 + export L_MM + echo 2015061006 + cut -c7-8 + L_DD=10 + export L_DD + echo 2015061006 + cut -c9-10 + L_HH=06 + export L_HH + L_FILE_DATE=2015-06-10_06:00:00 + export L_FILE_DATE + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d01_2015-06-10_06:00:00.e010 wrfbiochemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d02_2015-06-10_06:00:00.e010 wrfbiochemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfbiochemi_d03_2015-06-10_06:00:00.e010 wrfbiochemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d01_2015-06-10_06:00:00.e010 wrffirechemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d02_2015-06-10_06:00:00.e010 wrffirechemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrffirechemi_d03_2015-06-10_06:00:00.e010 wrffirechemi_d03_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d01_2015-06-10_06:00:00.e010 wrfchemi_d01_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d02_2015-06-10_06:00:00.e010 wrfchemi_d02_2015-06-10_06:00:00 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_emiss/wrfchemi_d03_2015-06-10_06:00:00.e010 wrfchemi_d03_2015-06-10_06:00:00 + /home/vy57456/zzbatmos_user/model/gfortran/MPI/wrfchem3_6_1_m_debug/WRFDA/var/da/da_advance_time.exe 2015061006 +1 + 2> /dev/null + L_DATE=2015061007 + export L_DATE + [[ 2015061007 -le 2015061006 ]] + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d01_2015-06-10_05:00:00.e010 wrfinput_d01 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d02_2015-06-10_05:00:00.e010 wrfinput_d02 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfinput_d03_2015-06-10_05:00:00.e010 wrfinput_d03 + cp /home/vy57456/zzbatmos_user/data/dart/CAFIRE/real_CAFIRE_RADM2_1hour_3d_noda/2015061005/wrfchem_chem_icbc/wrfbdy_d01_2015-06-10_05:00:00.e010 wrfbdy_d01 + NL_MAX_DOM=3 + export NL_MAX_DOM + NL_IOFIELDS_FILENAME=$'\'hist_io_flds_v1\',\'hist_io_flds_v2\',\'hist_io_flds_v3\'' + export NL_IOFIELDS_FILENAME + rm -rf namelist.input + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_create_wrfchem_namelist_RT.ksh + rm -f namelist.input + touch namelist.input + cat + 1> namelist.input 0<< \EOF &time_control run_days = 0, run_hours = 1, run_minutes = 0, run_seconds = 0, start_year = 2015,2015,2015, start_month = 06,06,06, start_day = 10,10,10, start_hour = 05,05,05, start_minute = 00,00,00, start_second = 00,00,00, end_year = 2015,2015,2015, end_month = 06,06,06, end_day = 10,10,10, end_hour = 06,06,06, end_minute = 00,00,00, end_second = 00,00,00, interval_seconds = 3600, input_from_file = .true.,.true.,.true., history_interval = 60,60,60, frames_per_outfile = 1,1,1, restart = .false., restart_interval = 1440, io_form_history = 2, io_form_restart = 2, io_form_input = 2, io_form_boundary = 2, auxinput5_inname = 'wrfchemi_d_', auxinput6_inname = 'wrfbiochemi_d_', auxinput7_inname = 'wrffirechemi_d_', auxinput12_inname = , auxinput5_interval_m = 60,60,60, auxinput6_interval_m = 60,60,60, auxinput7_interval_m = 60,60,60, auxinput12_interval_m = , frames_per_auxinput5 = 1,1,1, frames_per_auxinput6 = 1,1,1, frames_per_auxinput7 = 1,1,1, frames_per_auxinput12 = , io_form_auxinput5 = 2, io_form_auxinput6 = 2, io_form_auxinput7 = 2, io_form_auxinput12 = , iofields_filename = 'hist_io_flds_v1','hist_io_flds_v2','hist_io_flds_v3', write_input = .true., inputout_interval = 360, input_outname = 'wrfapm_d_', debug_level = 200, / &domains time_step = 60, time_step_fract_num = 0, time_step_fract_den = 1, max_dom = 3, s_we = 1,1,1, e_we = 196,256,259, s_sn = 1,1,1, e_sn = 168,229,205, s_vert = 1,1,1, e_vert = 37,37,37, num_metgrid_levels = 27, num_metgrid_soil_levels = 4, dx = 27000,9000,3000, dy = 27000,9000,3000, grid_id = 1,2,3, parent_id = 0,1,2, i_parent_start = 1,80,150, j_parent_start = 1,45,55, parent_grid_ratio = 1,3,3, parent_time_step_ratio = 1,3,3, feedback = 0, smooth_option = 1, lagrange_order = 2, interp_type = 2, extrap_type = 2, t_extrap_type = 2, use_surface = .true., use_levels_below_ground = .true., lowest_lev_from_sfc = .false., force_sfc_in_vinterp = 1, zap_close_levels = 500, interp_theta = .false., hypsometric_opt = 2, p_top_requested = 1000., eta_levels = 1.000000,0.996200,0.989737,0.982460,0.974381,0.965422,0.955498,0.944507,0.932347,0.918907,0.904075,0.887721,0.869715,0.849928,0.828211,0.804436,0.778472,0.750192,0.719474,0.686214,0.650339,0.611803,0.570656,0.526958,0.480854,0.432582,0.382474,0.330973,0.278674,0.226390,0.175086,0.132183,0.096211,0.065616,0.039773,0.018113,0.000000,, / &physics mp_physics = 8,8,8, ra_lw_physics = 4,4,4, ra_sw_physics = 4,4,4, radt = 15,3,1, sf_sfclay_physics = 1,1,1, sf_surface_physics = 2,2,2, bl_pbl_physics = 1,1,1, bldt = 0,0,0, cu_physics = 1,1,1, cudt = 0,0,0, cugd_avedx = 1, cu_rad_feedback = .true.,.true.,.true., cu_diag = 0,0,0, isfflx = 1, ifsnow = 0, icloud = 1, surface_input_source = 1, num_soil_layers = 4, mp_zero_out = 2, num_land_cat = 24, sf_urban_physics = 1,1,1, maxiens = 1, maxens = 3, maxens2 = 3, maxens3 = 16, ensdim = 144, / &dfi_control / &tc / &scm / &dynamics iso_temp = 200., tracer_opt = 0,0,0, w_damping = 1, diff_opt = 2, diff_6th_opt = 0,0,0, diff_6th_factor = 0.12,0.12,0.12, km_opt = 4, damp_opt = 1, zdamp = 5000,5000,5000, dampcoef = 0.15,0.15,0.15, non_hydrostatic = .true.,.true.,.true., use_baseparam_fr_nml = .true., moist_adv_opt = 2,2,2, scalar_adv_opt = 2,2,2, chem_adv_opt = 2,2,2, tke_adv_opt = 2,2,2, h_mom_adv_order = 5,5,5, v_mom_adv_order = 3,3,3, h_sca_adv_order = 5,5,5, v_sca_adv_order = 3,3,3, / &bdy_control spec_bdy_width = 5, spec_zone = 1, relax_zone = 4, specified = .true.,.false.,.false., nested = .false.,.true.,.true., / &grib2 / &namelist_quilt nio_tasks_per_group = 0, nio_groups = 1, / &chem kemit = 19, chem_opt = 112,112,112, bioemdt = 1,1,1, photdt = 30,30,30, chemdt = 1,1,1, io_style_emissions = 2, emiss_inpt_opt = 111,111,111, emiss_opt = 3,3,3, emiss_opt_vol = 0,0,0, chem_in_opt = 0,0,0, phot_opt = 3,3,3, gas_drydep_opt = 1,1,1, aer_drydep_opt = 1,1,1, bio_emiss_opt = 3,3,3, ne_area = 118, gas_bc_opt = 112,112,112, gas_ic_opt = 112,112,112, aer_bc_opt = 112,112,112, aer_ic_opt = 112,112,112, gaschem_onoff = 1,1,1, aerchem_onoff = 1,1,1, wetscav_onoff = 1,1,1, cldchem_onoff = 0,0,0, vertmix_onoff = 1,1,1, chem_conv_tr = 0,0,0, conv_tr_wetscav = 1,1,1, conv_tr_aqchem = 0,0,0, seas_opt = 0, dust_opt = 1, dmsemis_opt = 1, biomass_burn_opt = 2,2,2, plumerisefire_frq = 15,15,15, scale_fire_emiss = .true.,.true.,.true., have_bcs_chem = .true.,.true.,.true., aer_ra_feedback = 1,1,1, chemdiag = 0,1,1, aer_op_opt = 1, opt_pars_out = 1, have_bcs_upper = .false.,.false.,.false., fixed_ubc_press = 50.,50.,50., fixed_ubc_inname = 'ubvals_b40.20th.track1_1996-2005.nc', / EOF + JOBRND=31742_wrf + export JOBRND + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/job_script_taki.ksh 31742_wrf medium+ 16:00:00 2-4 48 wrf.exe PARALLEL + JOBID=31742_wrf + export JOBID + CLASS=medium+ + export CLASS + TIME_LIMIT=16:00:00 + export TIME_LIMIT + NODES=2-4 + export NODES + TASKS=48 + export TASKS + EXECUTE=wrf.exe + export EXECUTE + TYPE=PARALLEL + export TYPE + RANDOM=15802 + [[ -f job.ksh ]] + touch job.ksh + [[ PARALLEL == PARALLEL ]] + cat + 0<< \EOF #!/bin/bash #SBATCH --job-name 31742_wrf #SBATCH --qos medium+ #SBATCH --time 16:00:00 #SBATCH --output 31742_wrf.log #SBATCH --nodes 2-4 #SBATCH --ntasks 48 #SBATCH --partition high_mem #SBATCH --mem=max module load mpich/ge/gcc/64/3.2.1 /umbc/xfs1/zzbatmos/users/vy57456/application/gfortran/mpich-3.2.1/bin/mpirun -np ${SLURM_NTASKS} ./wrf.exe > index_32398.html 2>&1 export RC=$? if [[ -f SUCCESS ]]; then rm -rf SUCCESS; fi if [[ -f FAILED ]]; then rm -rf FAILED; fi if [[ $RC = 0 ]]; then touch SUCCESS else touch FAILED exit fi EOF 1> job.ksh + sbatch job.ksh Submitted batch job 1150673 + let IMEM=10+1 + [[ 11 -le 10 ]] + /home/vy57456/zzbatmos_user/model/DART/mizzi/DART_13172/tags/wrf-chem.r13172/models/wrf_chem/hybrid_scripts/da_run_hold_taki.ksh 31742